Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 3-249 |
| Cow position: | chr16:13924839-13925087 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 23, 50 |
| Conread position: | 10-238 |
| Cow position: | chr16:15682090-15682316 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 14-201 |
| Cow position: | chr16:2250052-2249870 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 105, 20 |
| Conread position: | 16-154 |
| Cow position: | chr16:33906922-33907057 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 16-177 |
| Cow position: | chr16:40122195-40122036 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 16-178 |
| Cow position: | chr16:30829495-30829654 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 16-189 |
| Cow position: | chr16:15433985-15433814 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-231 |
| Cow position: | chr16:5651370-5651158 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 16-231 |
| Cow position: | chr16:39021288-39021079 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 16-231 |
| Cow position: | chr16:47743175-47742962 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 105, 20 |
| Conread position: | 16-238 |
| Cow position: | chr16:56078919-56078705 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 105, 19 |
| Conread position: | 19-231 |
| Cow position: | chr16:47871311-47871520 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 85, 8 |
| Conread position: | 28-192 |
| Cow position: | chr16:45132848-45133014 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 91, 11 |
| Conread position: | 32-164 |
| Cow position: | chr16:10629694-10629562 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 23 |
| Conread position: | 32-171 |
| Cow position: | chr16:31531283-31531142 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-190 |
| Cow position: | chr16:37225517-37225677 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-231 |
| Cow position: | chr16:24173586-24173784 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-237 |
| Cow position: | chr16:11166824-11166613 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 32-237 |
| Cow position: | chr16:15669006-15669206 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 182, 18 |
| Conread position: | 32-238 |
| Cow position: | chr16:40516443-40516644 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-238 |
| Cow position: | chr16:48889771-48889979 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 32-240 |
| Cow position: | chr16:29626205-29626411 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 32-243 |
| Cow position: | chr16:4614628-4614418 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-249 |
| Cow position: | chr16:18054640-18054422 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-249 |
| Cow position: | chr16:27274948-27275161 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 33-164 |
| Cow position: | chr16:122539-122671 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 17 |
| Conread position: | 39-182 |
| Cow position: | chr16:16600031-16599886 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 40-238 |
| Cow position: | chr16:29661518-29661319 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 46-191 |
| Cow position: | chr16:56202774-56202623 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 46-249 |
| Cow position: | chr16:53617404-53617607 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 144 |
| Conread position: | 47-249 |
| Cow position: | chr16:35280842-35280639 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 72, 125 |
| Conread position: | 50-249 |
| Cow position: | chr16:17749374-17749573 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 51-247 |
| Cow position: | chr16:31133385-31133187 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 67, 136 |
| Conread position: | 68-249 |
| Cow position: | chr16:228854-228670 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 118-249 |
| Cow position: | chr16:11171641-11171512 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.