Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 1-200 |
| Cow position: | chr17:24586233-24586431 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 120, 32 |
| Conread position: | 15-189 |
| Cow position: | chr17:3836669-3836496 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 16-192 |
| Cow position: | chr17:26654709-26654537 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-210 |
| Cow position: | chr17:15525358-15525163 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 16-231 |
| Cow position: | chr17:25545186-25544961 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 192 |
| Conread position: | 16-249 |
| Cow position: | chr17:23783693-23783918 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 16-273 |
| Cow position: | chr17:21840279-21840038 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 17-231 |
| Cow position: | chr17:33985258-33985467 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 17 |
| Conread position: | 20-173 |
| Cow position: | chr17:6202983-6202831 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 32-183 |
| Cow position: | chr17:27593361-27593208 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-207 |
| Cow position: | chr17:5250-5422 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-225 |
| Cow position: | chr17:35251410-35251604 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-226 |
| Cow position: | chr17:21898529-21898334 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-239 |
| Cow position: | chr17:25504108-25503903 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-249 |
| Cow position: | chr17:3435300-3435083 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 33-244 |
| Cow position: | chr17:22808590-22808800 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 33-273 |
| Cow position: | chr17:22470140-22470381 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 89, 17 |
| Conread position: | 36-191 |
| Cow position: | chr17:19004756-19004918 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 65, 141 |
| Conread position: | 36-210 |
| Cow position: | chr17:41715522-41715347 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 38-247 |
| Cow position: | chr17:21851138-21851349 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 40-204 |
| Cow position: | chr17:33196354-33196521 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 43-216 |
| Cow position: | chr17:24995283-24995459 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 150 |
| Conread position: | 46-199 |
| Cow position: | chr17:22463756-22463910 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 13 |
| Conread position: | 46-249 |
| Cow position: | chr17:9086469-9086266 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 65 |
| Conread position: | 48-194 |
| Cow position: | chr17:24004825-24004682 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 64-238 |
| Cow position: | chr17:4512-4687 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 116 |
| Conread position: | 82-249 |
| Cow position: | chr17:26656132-26656303 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 129-249 |
| Cow position: | chr17:23809572-23809691 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.