Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 4-165 |
| Cow position: | chr18:22418896-22418731 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 10-266 |
| Cow position: | chr18:32396192-32395941 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 111, 10 |
| Conread position: | 11-237 |
| Cow position: | chr18:52393141-52393366 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 103, 16 |
| Conread position: | 15-176 |
| Cow position: | chr18:17220814-17220973 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 15-176 |
| Cow position: | chr18:17235462-17235621 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 15-236 |
| Cow position: | chr18:44215276-44215059 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 16-179 |
| Cow position: | chr18:880558-880400 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 16-186 |
| Cow position: | chr18:38308706-38308878 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 16-231 |
| Cow position: | chr18:56216689-56216478 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 20-183 |
| Cow position: | chr18:43243728-43243566 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 32-152 |
| Cow position: | chr18:7111811-7111691 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 32-165 |
| Cow position: | chr18:16064860-16064727 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 32-186 |
| Cow position: | chr18:24796348-24796193 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-215 |
| Cow position: | chr18:8340796-8340977 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 25 |
| Conread position: | 32-225 |
| Cow position: | chr18:14140079-14139884 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-231 |
| Cow position: | chr18:52708719-52708524 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 32-235 |
| Cow position: | chr18:17234270-17234070 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-237 |
| Cow position: | chr18:49646655-49646857 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 32-249 |
| Cow position: | chr18:21737193-21737413 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 32-249 |
| Cow position: | chr18:42735248-42735033 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 34-201 |
| Cow position: | chr18:25088972-25088808 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 69, 16 |
| Conread position: | 36-249 |
| Cow position: | chr18:4494852-4495065 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 83, 19 |
| Conread position: | 36-249 |
| Cow position: | chr18:32401488-32401275 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 40-238 |
| Cow position: | chr18:48004640-48004440 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 74, 10 |
| Conread position: | 55-194 |
| Cow position: | chr18:30979048-30979191 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 117-237 |
| Cow position: | chr18:26359833-26359715 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 5, 100 |
| Conread position: | 117-248 |
| Cow position: | chr18:39097401-39097271 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.