Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 3-275 |
| Cow position: | chr2:37052427-37052708 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 50 |
| Conread position: | 6-228 |
| Cow position: | chr2:2400470-2400695 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 10-249 |
| Cow position: | chr2:19063649-19063417 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 13-183 |
| Cow position: | chr2:5327763-5327931 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 18 |
| Conread position: | 13-237 |
| Cow position: | chr2:18088819-18089047 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 106, 20 |
| Conread position: | 13-249 |
| Cow position: | chr2:46258444-46258208 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 16-175 |
| Cow position: | chr2:66339620-66339781 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 16-183 |
| Cow position: | chr2:3713805-3713640 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-183 |
| Cow position: | chr2:49862086-49862252 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-191 |
| Cow position: | chr2:64175007-64175179 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-201 |
| Cow position: | chr2:13332172-13332354 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 16-209 |
| Cow position: | chr2:71461834-71461646 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-229 |
| Cow position: | chr2:45113675-45113885 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 16-229 |
| Cow position: | chr2:81129956-81130164 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-232 |
| Cow position: | chr2:73750896-73751109 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 16-237 |
| Cow position: | chr2:74694672-74694890 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 16-238 |
| Cow position: | chr2:77715380-77715166 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 28-231 |
| Cow position: | chr2:46448283-46448076 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 91, 163 |
| Conread position: | 32-171 |
| Cow position: | chr2:65334541-65334682 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-183 |
| Cow position: | chr2:15335819-15335970 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 32-188 |
| Cow position: | chr2:74482182-74482341 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-191 |
| Cow position: | chr2:29450536-29450699 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 87, 23 |
| Conread position: | 32-201 |
| Cow position: | chr2:33512423-33512254 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 145 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 32-201 |
| Cow position: | chr2:70279201-70279371 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-202 |
| Cow position: | chr2:57995946-57995780 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 133, 18 |
| Conread position: | 32-215 |
| Cow position: | chr2:66454682-66454866 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-237 |
| Cow position: | chr2:39548869-39548663 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 89, 14 |
| Conread position: | 32-247 |
| Cow position: | chr2:74811299-74811080 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-249 |
| Cow position: | chr2:376884-376666 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-249 |
| Cow position: | chr2:19150309-19150094 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 33-163 |
| Cow position: | chr2:37107143-37107011 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 20 |
| Conread position: | 36-189 |
| Cow position: | chr2:46277384-46277537 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 36-215 |
| Cow position: | chr2:69924265-69924084 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 82, 153 |
| Conread position: | 36-231 |
| Cow position: | chr2:42190923-42190731 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 39-210 |
| Cow position: | chr2:48071091-48070917 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 60, 130 |
| Conread position: | 39-232 |
| Cow position: | chr2:70177920-70177728 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 83, 11 |
| Conread position: | 40-249 |
| Cow position: | chr2:12854816-12855024 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 45-175 |
| Cow position: | chr2:45690210-45690344 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 54-249 |
| Cow position: | chr2:55407229-55407417 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 60, 7 |
| Conread position: | 64-249 |
| Cow position: | chr2:74308107-74308293 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 55, 125 |
| Conread position: | 82-232 |
| Cow position: | chr2:23648223-23648375 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 39, 105 |
| Conread position: | 82-249 |
| Cow position: | chr2:46307664-46307832 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 39, 51 |
| Conread position: | 89-238 |
| Cow position: | chr2:19575610-19575458 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 119 |
Show alignments to all cow chromosomes.