Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 10-161 |
| Cow position: | chr21:33270548-33270399 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 111, 21 |
| Conread position: | 13-249 |
| Cow position: | chr21:32040307-32040530 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 16-171 |
| Cow position: | chr21:7075360-7075206 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 16-188 |
| Cow position: | chr21:40698378-40698206 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 16-191 |
| Cow position: | chr21:49691079-49690907 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 16-194 |
| Cow position: | chr21:37260398-37260573 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 16-231 |
| Cow position: | chr21:12410351-12410141 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-231 |
| Cow position: | chr21:44558671-44558881 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 16-232 |
| Cow position: | chr21:37707947-37708160 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-249 |
| Cow position: | chr21:32920033-32919794 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 31-210 |
| Cow position: | chr21:42074698-42074878 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 88, 19 |
| Conread position: | 32-237 |
| Cow position: | chr21:958490-958283 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 32-238 |
| Cow position: | chr21:19671572-19671375 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 32-275 |
| Cow position: | chr21:35744018-35744271 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 22, 192 |
| Conread position: | 33-202 |
| Cow position: | chr21:41140032-41140201 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 36-209 |
| Cow position: | chr21:48538176-48538003 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 36-222 |
| Cow position: | chr21:372648-372834 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 36-231 |
| Cow position: | chr21:13361140-13360946 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 36-236 |
| Cow position: | chr21:8941281-8941479 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 39-231 |
| Cow position: | chr21:9015771-9015581 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 42-172 |
| Cow position: | chr21:12647543-12647410 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 44-231 |
| Cow position: | chr21:18540810-18540624 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 94 |
| Conread position: | 46-226 |
| Cow position: | chr21:35555690-35555511 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 48-183 |
| Cow position: | chr21:2681919-2681780 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 50-183 |
| Cow position: | chr21:14681948-14681811 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 130 |
| Conread position: | 51-198 |
| Cow position: | chr21:32401773-32401619 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 33, 143 |
| Conread position: | 92-266 |
| Cow position: | chr21:19934302-19934120 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.