Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 1-231 |
| Cow position: | chr29:29637503-29637729 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 4-478 |
| Cow position: | chr29:40567137-40566640 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 10-249 |
| Cow position: | chr29:43153069-43153304 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 109, 24 |
| Conread position: | 15-231 |
| Cow position: | chr29:39420051-39420263 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 16-183 |
| Cow position: | chr29:11360976-11360810 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 16-188 |
| Cow position: | chr29:29455883-29455713 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 103, 11 |
| Conread position: | 16-189 |
| Cow position: | chr29:313177-313010 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 102, 19 |
| Conread position: | 16-189 |
| Cow position: | chr29:16431518-16431347 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 16-231 |
| Cow position: | chr29:32203926-32204140 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 16-239 |
| Cow position: | chr29:10625885-10626105 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 20-187 |
| Cow position: | chr29:8849491-8849655 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 99, 15 |
| Conread position: | 32-189 |
| Cow position: | chr29:24801831-24801671 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-238 |
| Cow position: | chr29:39419505-39419710 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 32-249 |
| Cow position: | chr29:27058269-27058473 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 77 |
| Conread position: | 36-188 |
| Cow position: | chr29:23133904-23134058 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 36-231 |
| Cow position: | chr29:29128661-29128855 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 36-249 |
| Cow position: | chr29:1761793-1762006 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 36-249 |
| Cow position: | chr29:18444963-18444758 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 37-231 |
| Cow position: | chr29:26524533-26524334 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 145 |
| Conread position: | 39-230 |
| Cow position: | chr29:39532365-39532555 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 46-183 |
| Cow position: | chr29:11973110-11973252 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 54-249 |
| Cow position: | chr29:40874506-40874702 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 64, 86 |
| Conread position: | 477-804 |
| Cow position: | chr29:40566097-40565740 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 326 |
Show alignments to all cow chromosomes.