Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 9-209 |
| Cow position: | chr3:9770357-9770558 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 11-238 |
| Cow position: | chr3:53910842-53911064 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 111, 20 |
| Conread position: | 13-232 |
| Cow position: | chr3:8146932-8146714 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 88, 21 |
| Conread position: | 13-237 |
| Cow position: | chr3:16574564-16574787 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 106, 18 |
| Conread position: | 13-249 |
| Cow position: | chr3:83458937-83459169 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 105, 37 |
| Conread position: | 15-165 |
| Cow position: | chr3:52852108-52851962 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 15-192 |
| Cow position: | chr3:79141942-79142120 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 16-188 |
| Cow position: | chr3:14184430-14184260 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 16-189 |
| Cow position: | chr3:73549105-73549278 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 16-198 |
| Cow position: | chr3:75055834-75055653 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 105, 11 |
| Conread position: | 16-229 |
| Cow position: | chr3:79071101-79070894 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 16-231 |
| Cow position: | chr3:25695524-25695736 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 16-231 |
| Cow position: | chr3:72884807-72885021 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 95, 18 |
| Conread position: | 16-249 |
| Cow position: | chr3:63998180-63998404 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 15 |
| Conread position: | 16-249 |
| Cow position: | chr3:69279957-69279725 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 105, 80 |
| Conread position: | 23-168 |
| Cow position: | chr3:67537669-67537521 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 32-160 |
| Cow position: | chr3:7814306-7814436 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 32-165 |
| Cow position: | chr3:48920453-48920319 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 84, 23 |
| Conread position: | 32-214 |
| Cow position: | chr3:6769934-6769750 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-225 |
| Cow position: | chr3:81222301-81222496 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-235 |
| Cow position: | chr3:8435535-8435332 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-241 |
| Cow position: | chr3:11952182-11951972 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 38-238 |
| Cow position: | chr3:53210683-53210481 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 142 |
| Conread position: | 39-223 |
| Cow position: | chr3:31110331-31110515 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 39-232 |
| Cow position: | chr3:28595684-28595494 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 39-249 |
| Cow position: | chr3:23178559-23178770 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 11 |
| Conread position: | 46-238 |
| Cow position: | chr3:63151786-63151593 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 75, 41 |
| Conread position: | 50-249 |
| Cow position: | chr3:32578874-32578673 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 71, 130 |
| Conread position: | 51-209 |
| Cow position: | chr3:45936995-45937155 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 68, 13 |
| Conread position: | 70-249 |
| Cow position: | chr3:83980690-83980514 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 75-201 |
| Cow position: | chr3:6559180-6559055 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 102-237 |
| Cow position: | chr3:6736302-6736439 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 109 |
Show alignments to all cow chromosomes.