Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 5-240 |
| Cow position: | chr4:45383154-45382919 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 13-200 |
| Cow position: | chr4:54379215-54379031 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 15-230 |
| Cow position: | chr4:36505772-36505979 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 15-239 |
| Cow position: | chr4:18797529-18797750 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 16-171 |
| Cow position: | chr4:44425598-44425445 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 16-172 |
| Cow position: | chr4:29119539-29119385 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 16-177 |
| Cow position: | chr4:52516801-52516640 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 16-183 |
| Cow position: | chr4:16942174-16942339 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 16-213 |
| Cow position: | chr4:35070453-35070258 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 16-231 |
| Cow position: | chr4:18283583-18283792 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 98, 18 |
| Conread position: | 16-232 |
| Cow position: | chr4:45224387-45224607 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 163 |
| Conread position: | 18-249 |
| Cow position: | chr4:38951616-38951844 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 103, 13 |
| Conread position: | 31-235 |
| Cow position: | chr4:58789983-58789784 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 19 |
| Conread position: | 32-165 |
| Cow position: | chr4:25153230-25153097 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-166 |
| Cow position: | chr4:17093952-17094088 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-179 |
| Cow position: | chr4:54355715-54355865 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 32-225 |
| Cow position: | chr4:30016822-30017018 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 32-230 |
| Cow position: | chr4:43283887-43283684 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 32-238 |
| Cow position: | chr4:3901840-3901632 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 32-238 |
| Cow position: | chr4:59858028-59858233 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-243 |
| Cow position: | chr4:64963336-64963548 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 32-249 |
| Cow position: | chr4:59577707-59577926 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 114 |
| Conread position: | 32-249 |
| Cow position: | chr4:63548896-63549113 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 36-235 |
| Cow position: | chr4:32843907-32844108 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 86, 14 |
| Conread position: | 40-232 |
| Cow position: | chr4:49765124-49764927 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 10 |
| Conread position: | 44-154 |
| Cow position: | chr4:32713467-32713354 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 44-189 |
| Cow position: | chr4:4032098-4031951 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 75, 145 |
| Conread position: | 44-189 |
| Cow position: | chr4:39337326-39337176 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 44-216 |
| Cow position: | chr4:62831767-62831594 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 70, 114 |
| Conread position: | 44-230 |
| Cow position: | chr4:37548572-37548761 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 78, 133 |
| Conread position: | 45-250 |
| Cow position: | chr4:40249583-40249793 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 144 |
| Conread position: | 46-165 |
| Cow position: | chr4:56263657-56263779 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 46-173 |
| Cow position: | chr4:57644044-57643913 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 46-213 |
| Cow position: | chr4:25188949-25188779 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 163 |
| Conread position: | 50-201 |
| Cow position: | chr4:58787230-58787384 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 50-210 |
| Cow position: | chr4:37857330-37857495 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 50-249 |
| Cow position: | chr4:165831-166030 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 137 |
| Conread position: | 54-249 |
| Cow position: | chr4:4125872-4126064 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 67, 135 |
| Conread position: | 57-238 |
| Cow position: | chr4:181708-181528 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 17 |
Show alignments to all cow chromosomes.