Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 4-236 |
| Cow position: | chr5:41330500-41330727 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 4-238 |
| Cow position: | chr5:16177191-16177422 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 114, 30 |
| Conread position: | 15-238 |
| Cow position: | chr5:45565171-45564950 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 103, 16 |
| Conread position: | 15-250 |
| Cow position: | chr5:43087191-43087422 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 16-167 |
| Cow position: | chr5:60041656-60041805 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 16-188 |
| Cow position: | chr5:39338716-39338544 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 16-189 |
| Cow position: | chr5:40388515-40388687 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-192 |
| Cow position: | chr5:47837978-47838152 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-249 |
| Cow position: | chr5:9520354-9520575 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 19-198 |
| Cow position: | chr5:8132858-8132681 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 20-214 |
| Cow position: | chr5:39323441-39323248 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 99, 7 |
| Conread position: | 32-165 |
| Cow position: | chr5:60277851-60277984 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 21 |
| Conread position: | 32-189 |
| Cow position: | chr5:51822751-51822592 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 150 |
| Conread position: | 32-189 |
| Cow position: | chr5:63252289-63252447 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 32-231 |
| Cow position: | chr5:25479356-25479155 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 136, 18 |
| Conread position: | 32-231 |
| Cow position: | chr5:34024990-34024793 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-231 |
| Cow position: | chr5:47460050-47459856 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 37 |
| Conread position: | 32-235 |
| Cow position: | chr5:20840428-20840625 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 12 |
| Conread position: | 32-238 |
| Cow position: | chr5:44697055-44697262 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 33-243 |
| Cow position: | chr5:42709765-42709964 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 34-238 |
| Cow position: | chr5:49879287-49879086 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 36-202 |
| Cow position: | chr5:43658785-43658619 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 82, 14 |
| Conread position: | 36-231 |
| Cow position: | chr5:26464765-26464959 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 134, 14 |
| Conread position: | 36-249 |
| Cow position: | chr5:60922230-60922444 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 85, 136 |
| Conread position: | 39-226 |
| Cow position: | chr5:45196570-45196385 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 40-188 |
| Cow position: | chr5:59053388-59053538 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 81, 10 |
| Conread position: | 44-249 |
| Cow position: | chr5:63078327-63078529 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 77, 30 |
| Conread position: | 46-231 |
| Cow position: | chr5:31249433-31249245 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 46-249 |
| Cow position: | chr5:3396597-3396804 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 141 |
| Conread position: | 47-188 |
| Cow position: | chr5:59044940-59045084 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 47-229 |
| Cow position: | chr5:47767828-47768011 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 9, 145 |
| Conread position: | 50-186 |
| Cow position: | chr5:45710261-45710121 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 50-187 |
| Cow position: | chr5:12690942-12691083 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 54-175 |
| Cow position: | chr5:2489487-2489610 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 103 |
| Conread position: | 54-240 |
| Cow position: | chr5:63395466-63395278 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 63-238 |
| Cow position: | chr5:20848256-20848078 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 123 |
Show alignments to all cow chromosomes.