Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 2-231 |
| Cow position: | chr6:28440806-28440582 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 2-274 |
| Cow position: | chr6:2592704-2592979 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 4-250 |
| Cow position: | chr6:16184384-16184619 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 13-209 |
| Cow position: | chr6:55972526-55972329 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 21 |
| Conread position: | 13-249 |
| Cow position: | chr6:43603226-43603464 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 15-183 |
| Cow position: | chr6:61409979-61410143 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 15-243 |
| Cow position: | chr6:32688013-32688235 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 181 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 15-249 |
| Cow position: | chr6:63012041-63011814 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 16-170 |
| Cow position: | chr6:5338466-5338622 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 16-176 |
| Cow position: | chr6:51396060-51396217 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 19 |
| Conread position: | 16-191 |
| Cow position: | chr6:16552105-16552281 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 16-192 |
| Cow position: | chr6:55503311-55503138 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 16-243 |
| Cow position: | chr6:4387582-4387354 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 16-249 |
| Cow position: | chr6:35751342-35751569 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 19-249 |
| Cow position: | chr6:60415002-60414779 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 32-158 |
| Cow position: | chr6:40822000-40822127 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 82, 16 |
| Conread position: | 32-183 |
| Cow position: | chr6:29838748-29838595 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-237 |
| Cow position: | chr6:417800-418005 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-237 |
| Cow position: | chr6:69053967-69054172 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 32-238 |
| Cow position: | chr6:15264685-15264893 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 32-239 |
| Cow position: | chr6:29678877-29679085 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 36-249 |
| Cow position: | chr6:16611734-16611948 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 43-233 |
| Cow position: | chr6:374417-374609 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 145 |
| Conread position: | 45-231 |
| Cow position: | chr6:17291611-17291798 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 147 |
| Conread position: | 46-188 |
| Cow position: | chr6:53264554-53264407 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 46-199 |
| Cow position: | chr6:26637862-26638017 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 46-214 |
| Cow position: | chr6:59218807-59218633 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 10, 136 |
| Conread position: | 46-249 |
| Cow position: | chr6:35187635-35187427 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 153 |
| Conread position: | 50-189 |
| Cow position: | chr6:63028929-63028787 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 50-193 |
| Cow position: | chr6:8957154-8957011 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 69, 127 |
Show alignments to all cow chromosomes.