Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 3-249 |
| Cow position: | chr8:20660879-20661123 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 6-235 |
| Cow position: | chr8:25797736-25797513 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 115, 8 |
| Conread position: | 9-238 |
| Cow position: | chr8:22039833-22040062 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 10-159 |
| Cow position: | chr8:12084531-12084383 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 109, 25 |
| Conread position: | 13-249 |
| Cow position: | chr8:49672941-49673180 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 14-231 |
| Cow position: | chr8:1653897-1653681 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 15-229 |
| Cow position: | chr8:24688204-24688414 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 16-154 |
| Cow position: | chr8:42640807-42640943 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 16-165 |
| Cow position: | chr8:51963930-51963783 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 16-173 |
| Cow position: | chr8:37441900-37441745 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 18 |
| Conread position: | 16-202 |
| Cow position: | chr8:49882005-49882190 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 105, 19 |
| Conread position: | 16-209 |
| Cow position: | chr8:12210406-12210598 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-231 |
| Cow position: | chr8:49987055-49987271 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 16-237 |
| Cow position: | chr8:1443044-1442827 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 16-268 |
| Cow position: | chr8:19024784-19025050 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 102, 15 |
| Conread position: | 20-232 |
| Cow position: | chr8:60577878-60577664 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 32-157 |
| Cow position: | chr8:5671201-5671328 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 32-163 |
| Cow position: | chr8:16231570-16231438 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 87, 23 |
| Conread position: | 32-189 |
| Cow position: | chr8:39059833-39059676 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-192 |
| Cow position: | chr8:35558859-35558698 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 32-223 |
| Cow position: | chr8:48674214-48674023 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 32-228 |
| Cow position: | chr8:60000850-60001054 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 32-231 |
| Cow position: | chr8:5246909-5246710 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-240 |
| Cow position: | chr8:33160932-33160722 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-249 |
| Cow position: | chr8:48454794-48455013 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 33-199 |
| Cow position: | chr8:5669727-5669565 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 86, 108 |
| Conread position: | 33-249 |
| Cow position: | chr8:7004197-7004409 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 88, 51 |
| Conread position: | 39-244 |
| Cow position: | chr8:23352667-23352445 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 40-237 |
| Cow position: | chr8:46794603-46794402 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 46-230 |
| Cow position: | chr8:25386673-25386488 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 46-231 |
| Cow position: | chr8:1649234-1649419 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 73, 141 |
| Conread position: | 50-183 |
| Cow position: | chr8:9292965-9292829 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 107 |
| Conread position: | 75-246 |
| Cow position: | chr8:6871423-6871593 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 93 |
| Conread position: | 75-249 |
| Cow position: | chr8:21767669-21767496 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 101 |
Show alignments to all cow chromosomes.