Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 1-273 |
| Cow position: | chr9:47520089-47520349 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 36, 152 |
| Conread position: | 10-236 |
| Cow position: | chr9:55033204-55032982 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 111, 21 |
| Conread position: | 13-210 |
| Cow position: | chr9:6317083-6317276 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 15-229 |
| Cow position: | chr9:31644055-31644268 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 99, 47 |
| Conread position: | 16-166 |
| Cow position: | chr9:8204005-8204153 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 16-172 |
| Cow position: | chr9:47438894-47439050 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 16-187 |
| Cow position: | chr9:36420841-36420672 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 102, 15 |
| Conread position: | 16-208 |
| Cow position: | chr9:44718163-44718352 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 16-249 |
| Cow position: | chr9:10896659-10896892 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 16-249 |
| Cow position: | chr9:62925489-62925262 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 101, 15 |
| Conread position: | 32-165 |
| Cow position: | chr9:3873528-3873660 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 32-165 |
| Cow position: | chr9:59872073-59871942 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 32-183 |
| Cow position: | chr9:44559985-44560141 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 32-184 |
| Cow position: | chr9:44559655-44559507 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 32-219 |
| Cow position: | chr9:10571453-10571638 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-231 |
| Cow position: | chr9:9390971-9390762 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 68, 84 |
| Conread position: | 32-232 |
| Cow position: | chr9:20984100-20983898 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 32-238 |
| Cow position: | chr9:22953462-22953666 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 36-163 |
| Cow position: | chr9:25437099-25437226 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 36-232 |
| Cow position: | chr9:49582716-49582911 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 36-238 |
| Cow position: | chr9:28281782-28281578 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 164 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 36-249 |
| Cow position: | chr9:28248898-28248678 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 39-232 |
| Cow position: | chr9:6721592-6721787 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 17, 150 |
| Conread position: | 46-249 |
| Cow position: | chr9:13453550-13453757 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 50-219 |
| Cow position: | chr9:32609259-32609431 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 143 |
| Conread position: | 51-273 |
| Cow position: | chr9:28599202-28599432 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 53-164 |
| Cow position: | chr9:7405382-7405496 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 64-231 |
| Cow position: | chr9:25032608-25032777 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 123 |
Show alignments to all cow chromosomes.