Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01A090064.5 |
| Conread position: | 13-249 |
| Cow position: | chrX:38739949-38739714 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 106, 21 |
| Conread position: | 15-247 |
| Cow position: | chrX:6815804-6815570 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 16-172 |
| Cow position: | chrX:25441892-25442047 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 16-204 |
| Cow position: | chrX:21177765-21177948 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 16-219 |
| Cow position: | chrX:31465977-31466174 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 16-229 |
| Cow position: | chrX:32568497-32568707 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 16-238 |
| Cow position: | chrX:23364279-23364498 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 20-249 |
| Cow position: | chrX:13259276-13259501 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 99, 15 |
| Conread position: | 31-194 |
| Cow position: | chrX:31919133-31919297 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 19 |
| Conread position: | 32-174 |
| Cow position: | chrX:38139090-38139234 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 32-208 |
| Cow position: | chrX:42559389-42559566 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 89, 23 |
| Conread position: | 32-212 |
| Cow position: | chrX:4547404-4547586 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 156 |
| Conread position: | 32-219 |
| Cow position: | chrX:42558348-42558167 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 32-220 |
| Cow position: | chrX:41930027-41929837 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 87, 159 |
| Conread position: | 32-235 |
| Cow position: | chrX:11571984-11571795 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 32-244 |
| Cow position: | chrX:24630985-24630781 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 195, 81 |
| Conread position: | 33-166 |
| Cow position: | chrX:26352280-26352414 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 33-236 |
| Cow position: | chrX:1340491-1340703 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 36-165 |
| Cow position: | chrX:219819-219692 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 83, 6 |
| Conread position: | 36-172 |
| Cow position: | chrX:3040258-3040395 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 36-239 |
| Cow position: | chrX:31908939-31909150 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 36-245 |
| Cow position: | chrX:13816863-13816651 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 38-238 |
| Cow position: | chrX:25435022-25434819 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 39-236 |
| Cow position: | chrX:42915703-42915512 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 40-165 |
| Cow position: | chrX:15370046-15370173 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 41-232 |
| Cow position: | chrX:29774630-29774440 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 45-232 |
| Cow position: | chrX:25219125-25218946 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 10 |
| Conread position: | 47-247 |
| Cow position: | chrX:31443893-31443695 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 72, 43 |
| Conread position: | 48-238 |
| Cow position: | chrX:21242916-21243116 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 50-213 |
| Cow position: | chrX:25236917-25237080 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 136 |
| Conread position: | 74-232 |
| Cow position: | chrX:38737318-38737476 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 84-249 |
| Cow position: | chrX:18507512-18507678 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 90-249 |
| Cow position: | chrX:25227482-25227322 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 31, 99 |
| Conread position: | 90-265 |
| Cow position: | chrX:17482984-17483160 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 97 |
Show alignments to all cow chromosomes.