Cow genome map


           Conread name:
           Ss1.1-Spl1-SPL01C040047.5.5
        

               Conread position:
               39-187
               

               Cow position:
               chr5:18990171-18990025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               145
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               242-361
               

               Cow position:
               chr5:18988793-18988674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               116
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               359-492
               

               Cow position:
               chr5:18986714-18986581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               130
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               491-621
               

               Cow position:
               chr5:18985485-18985355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               125
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               620-697
               

               Cow position:
               chr5:18984323-18984246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               78
               

               Alignm identity:
               78
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               694-790
               

               Cow position:
               chr5:18982450-18982354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               97
               

               Alignm identity:
               97
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               832-904
               

               Cow position:
               chr5:18979981-18979909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               73
               

               Alignm identity:
               73
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1000-1170
               

               Cow position:
               chr5:18977667-18977497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1167-1440
               

               Cow position:
               chr5:18971648-18971374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 66
               

               Conread position:
               1441-1560
               

               Cow position:
               chr5:18971329-18971211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               120
               

               Alignm identity:
               119
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               87, 0
               
Show alignments to all cow chromosomes.