Cow genome map

Conread name: Ss1.1-Spl1-SPL01C070055.5

Conread position: 1-297
Cow position: chr10:28931287-28930989 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 88, 134

Conread position: 1-816
Cow position: chr10:38545792-38544969 (view UCSC Genome Browser custom track)
Alignm length: 860
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 24

Conread position: 30-222
Cow position: chr10:42629086-42629284 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 104

Conread position: 41-584
Cow position: chr10:14861405-14861962 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 368
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 53, 92

Conread position: 262-645
Cow position: chr10:58596797-58597167 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 262
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 41

Conread position: 283-732
Cow position: chr10:24311932-24311479 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 275
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 64, 71

Conread position: 311-650
Cow position: chr10:41567544-41567883 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 92

Conread position: 312-642
Cow position: chr10:38403744-38403416 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 225
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 30, 9

Conread position: 313-652
Cow position: chr10:39040852-39040519 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 78

Conread position: 315-518
Cow position: chr10:17432804-17432614 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 116, 78

Conread position: 315-525
Cow position: chr10:37770818-37771022 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 167
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 116, 77

Conread position: 315-572
Cow position: chr10:25564815-25564565 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 101, 87

Conread position: 315-585
Cow position: chr10:1377693-1377955 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-610
Cow position: chr10:3542777-3542485 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 116, 73

Conread position: 315-614
Cow position: chr10:29102131-29101837 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 33

Conread position: 315-643
Cow position: chr10:38344908-38344583 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 78

Conread position: 315-644
Cow position: chr10:31538114-31538437 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 233
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 20, 71

Conread position: 315-644
Cow position: chr10:57989541-57989212 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 87

Conread position: 315-644
Cow position: chr10:62408398-62408066 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-645
Cow position: chr10:14335395-14335070 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr10:2120561-2120225 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr10:7281642-7281302 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 315-652
Cow position: chr10:19512057-19512396 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 89

Conread position: 315-652
Cow position: chr10:19715117-19714779 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 28

Conread position: 315-652
Cow position: chr10:30685062-30684727 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 76

Conread position: 315-652
Cow position: chr10:38538051-38537711 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 77

Conread position: 315-652
Cow position: chr10:41877363-41877703 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 81

Conread position: 315-732
Cow position: chr10:29846199-29845761 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 79

Conread position: 315-732
Cow position: chr10:31524548-31524967 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 89

Conread position: 315-816
Cow position: chr10:16925983-16926476 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 76

Conread position: 315-816
Cow position: chr10:22101685-22102179 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 79

Conread position: 316-645
Cow position: chr10:8326846-8326527 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 89

Conread position: 317-475
Cow position: chr10:39816038-39815886 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 115, 13

Conread position: 317-490
Cow position: chr10:32578735-32578902 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 115, 67

Conread position: 317-541
Cow position: chr10:41388658-41388440 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 115, 77

Conread position: 317-567
Cow position: chr10:51952174-51951934 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-581
Cow position: chr10:39779688-39779940 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 19

Conread position: 317-626
Cow position: chr10:14929336-14929641 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 223
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 136, 37

Conread position: 317-645
Cow position: chr10:24977311-24976983 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 115, 33

Conread position: 317-650
Cow position: chr10:5849178-5848843 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 67

Conread position: 317-650
Cow position: chr10:56065121-56065457 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 85

Conread position: 317-651
Cow position: chr10:64302315-64301987 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 242
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 18, 38

Conread position: 317-652
Cow position: chr10:4191790-4191462 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-652
Cow position: chr10:14804283-14804620 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 45

Conread position: 317-652
Cow position: chr10:19495838-19495494 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 60

Conread position: 317-652
Cow position: chr10:40151800-40151459 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 88

Conread position: 317-652
Cow position: chr10:41157895-41158227 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-807
Cow position: chr10:21400223-21399738 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-807
Cow position: chr10:21740304-21739816 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 58

Conread position: 317-807
Cow position: chr10:39180233-39180723 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 74

Conread position: 317-810
Cow position: chr10:11698691-11699179 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 69

Conread position: 317-810
Cow position: chr10:28641987-28642469 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 64

Conread position: 317-810
Cow position: chr10:47907378-47907866 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-816
Cow position: chr10:8290431-8290920 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 74

Conread position: 317-816
Cow position: chr10:21487370-21487863 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 74

Conread position: 317-816
Cow position: chr10:26597067-26597556 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 80

Conread position: 318-652
Cow position: chr10:55093714-55094052 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 86

Conread position: 319-638
Cow position: chr10:32557810-32558125 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 113, 82

Conread position: 321-645
Cow position: chr10:66899905-66899586 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 228
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 14, 31

Conread position: 321-816
Cow position: chr10:50135015-50135503 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 71

Conread position: 323-550
Cow position: chr10:28115643-28115428 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 93, 21

Conread position: 334-807
Cow position: chr10:11685180-11684712 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 68

Conread position: 338-644
Cow position: chr10:39879886-39879582 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 222
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 207, 44

Conread position: 338-644
Cow position: chr10:57482571-57482276 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 245, 53

Conread position: 350-652
Cow position: chr10:124873-125178 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 42

Conread position: 350-652
Cow position: chr10:280127-279822 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 52

Conread position: 352-652
Cow position: chr10:61927713-61927416 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 159, 51

Conread position: 357-548
Cow position: chr10:5675-5860 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 75, 46

Conread position: 357-618
Cow position: chr10:8340367-8340626 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 22

Conread position: 359-645
Cow position: chr10:19544875-19544594 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 73, 28

Conread position: 359-652
Cow position: chr10:42110905-42111192 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 202, 10

Conread position: 359-652
Cow position: chr10:42749342-42749621 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 199
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 212, 45

Conread position: 365-652
Cow position: chr10:29632276-29631981 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 83

Conread position: 366-661
Cow position: chr10:42229321-42229619 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 112, 37

Conread position: 369-662
Cow position: chr10:46196000-46196307 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 53

Conread position: 374-721
Cow position: chr10:15084509-15084870 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 251
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 58, 27

Conread position: 386-815
Cow position: chr10:33347859-33348287 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 92

Conread position: 396-652
Cow position: chr10:21480445-21480710 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 55

Conread position: 404-645
Cow position: chr10:20370579-20370345 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 183
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 23, 58

Conread position: 409-650
Cow position: chr10:49990975-49991225 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 29, 72

Conread position: 419-607
Cow position: chr10:25978645-25978452 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 11, 62

Conread position: 440-585
Cow position: chr10:10582423-10582569 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 124, 40

Conread position: 452-581
Cow position: chr10:15860103-15859977 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 466-621
Cow position: chr10:24262724-24262561 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 98, 14

Conread position: 485-810
Cow position: chr10:21731237-21730912 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 229
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 78, 176

Conread position: 492-810
Cow position: chr10:34285874-34286193 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 222
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 70, 169

Conread position: 505-621
Cow position: chr10:27664901-27664776 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 56, 0

Show alignments to all cow chromosomes.