Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 242-652 |
| Cow position: | chr12:21942035-21942449 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 305-816 |
| Cow position: | chr12:20997727-20997229 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 24 |
| Conread position: | 311-645 |
| Cow position: | chr12:21226598-21226264 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 88 |
| Conread position: | 313-816 |
| Cow position: | chr12:14662257-14661762 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 315-400 |
| Cow position: | chr12:36482812-36482897 (view UCSC Genome Browser custom track) |
| Alignm length: | 86 |
| Alignm identity: | 76 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 315-620 |
| Cow position: | chr12:42859451-42859142 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 315-644 |
| Cow position: | chr12:3631490-3631160 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 258, 87 |
| Conread position: | 315-645 |
| Cow position: | chr12:28765645-28765314 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr12:6406273-6405933 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr12:8677711-8677389 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 117, 69 |
| Conread position: | 315-652 |
| Cow position: | chr12:21198335-21198673 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 75 |
| Conread position: | 315-652 |
| Cow position: | chr12:27855583-27855254 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 315-722 |
| Cow position: | chr12:36479548-36479971 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 315-732 |
| Cow position: | chr12:22205370-22204931 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-815 |
| Cow position: | chr12:36427610-36428096 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 315-816 |
| Cow position: | chr12:11098618-11099102 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-816 |
| Cow position: | chr12:25100684-25100189 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-816 |
| Cow position: | chr12:36367207-36367702 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 316-652 |
| Cow position: | chr12:36448953-36449289 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 86 |
| Conread position: | 317-493 |
| Cow position: | chr12:33986535-33986705 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 115, 67 |
| Conread position: | 317-503 |
| Cow position: | chr12:16821848-16822028 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 115, 65 |
| Conread position: | 317-513 |
| Cow position: | chr12:21427066-21427255 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 115, 27 |
| Conread position: | 317-570 |
| Cow position: | chr12:21371055-21371294 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 317-586 |
| Cow position: | chr12:2282936-2283203 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 108, 76 |
| Conread position: | 317-586 |
| Cow position: | chr12:37558926-37559189 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 19 |
| Conread position: | 317-632 |
| Cow position: | chr12:27932571-27932237 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 31, 332 |
| Conread position: | 317-644 |
| Cow position: | chr12:1402870-1403197 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 71 |
| Conread position: | 317-650 |
| Cow position: | chr12:32653917-32654252 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 317-650 |
| Cow position: | chr12:43031013-43030678 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 15 |
| Conread position: | 317-810 |
| Cow position: | chr12:4157750-4158238 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 317-810 |
| Cow position: | chr12:8197589-8198077 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 319-644 |
| Cow position: | chr12:600978-600653 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 83 |
| Conread position: | 336-810 |
| Cow position: | chr12:3361306-3361787 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 339 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 96, 56 |
| Conread position: | 375-717 |
| Cow position: | chr12:35314220-35313864 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 27 |
| Conread position: | 396-816 |
| Cow position: | chr12:25263021-25262600 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 87 |
| Conread position: | 399-644 |
| Cow position: | chr12:10485508-10485758 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 31, 82 |
| Conread position: | 400-652 |
| Cow position: | chr12:1889061-1888803 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 32, 81 |
| Conread position: | 409-652 |
| Cow position: | chr12:21209122-21209364 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 501-810 |
| Cow position: | chr12:21428410-21428720 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 146 |
Show alignments to all cow chromosomes.