Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 31-346 |
| Cow position: | chr13:20542209-20541881 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 58, 198 |
| Conread position: | 36-524 |
| Cow position: | chr13:26843953-26844441 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 343 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 313-510 |
| Cow position: | chr13:34911010-34910820 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 313-644 |
| Cow position: | chr13:4483950-4484281 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 78 |
| Conread position: | 313-651 |
| Cow position: | chr13:6667965-6667627 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 89 |
| Conread position: | 315-457 |
| Cow position: | chr13:22766181-22766318 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 79 |
| Conread position: | 315-567 |
| Cow position: | chr13:33336266-33336028 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 116, 27 |
| Conread position: | 315-620 |
| Cow position: | chr13:9044657-9044965 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 315-644 |
| Cow position: | chr13:1593000-1592668 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 315-644 |
| Cow position: | chr13:3654164-3653836 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-644 |
| Cow position: | chr13:15520344-15520023 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 315-644 |
| Cow position: | chr13:23003152-23002821 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-644 |
| Cow position: | chr13:34868899-34869229 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 315-645 |
| Cow position: | chr13:32545533-32545866 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 88 |
| Conread position: | 315-645 |
| Cow position: | chr13:35757398-35757731 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 79 |
| Conread position: | 315-652 |
| Cow position: | chr13:13900022-13900361 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 78 |
| Conread position: | 315-652 |
| Cow position: | chr13:15924227-15923888 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-652 |
| Cow position: | chr13:30238402-30238734 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-652 |
| Cow position: | chr13:30303433-30303775 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 27 |
| Conread position: | 315-652 |
| Cow position: | chr13:32737670-32737332 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 76 |
| Conread position: | 315-652 |
| Cow position: | chr13:35030703-35031030 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 315-731 |
| Cow position: | chr13:34325407-34324968 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 315-732 |
| Cow position: | chr13:31612152-31611714 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 78 |
| Conread position: | 317-576 |
| Cow position: | chr13:3057958-3057705 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 317-585 |
| Cow position: | chr13:4941240-4941505 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 77 |
| Conread position: | 317-616 |
| Cow position: | chr13:677015-677329 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-626 |
| Cow position: | chr13:13324901-13325204 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-630 |
| Cow position: | chr13:49973836-49974152 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-645 |
| Cow position: | chr13:21840046-21839715 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-645 |
| Cow position: | chr13:34042210-34041884 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 317-650 |
| Cow position: | chr13:2388666-2388325 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr13:17308626-17308962 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 317-650 |
| Cow position: | chr13:32985194-32984861 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 86 |
| Conread position: | 317-650 |
| Cow position: | chr13:41316011-41316347 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 317-650 |
| Cow position: | chr13:58118756-58118420 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr13:60466488-60466818 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 85 |
| Conread position: | 317-652 |
| Cow position: | chr13:30244526-30244189 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr13:31733933-31733595 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 83 |
| Conread position: | 317-732 |
| Cow position: | chr13:15450954-15450524 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 72 |
| Conread position: | 317-810 |
| Cow position: | chr13:47229849-47229363 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 86 |
| Conread position: | 317-816 |
| Cow position: | chr13:20541878-20541397 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 76 |
| Conread position: | 319-652 |
| Cow position: | chr13:30656821-30656491 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 73 |
| Conread position: | 320-652 |
| Cow position: | chr13:50109616-50109943 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 24 |
| Conread position: | 321-652 |
| Cow position: | chr13:34937650-34937973 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 321-721 |
| Cow position: | chr13:22185078-22184681 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 321-721 |
| Cow position: | chr13:29227799-29227398 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 322-584 |
| Cow position: | chr13:2582494-2582246 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 184, 51 |
| Conread position: | 325-644 |
| Cow position: | chr13:43982915-43982600 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 326-587 |
| Cow position: | chr13:22831523-22831268 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 106, 77 |
| Conread position: | 328-634 |
| Cow position: | chr13:5625910-5625618 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 336-625 |
| Cow position: | chr13:27922049-27921770 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 247, 51 |
| Conread position: | 352-567 |
| Cow position: | chr13:18331600-18331810 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 8, 43 |
| Conread position: | 396-650 |
| Cow position: | chr13:12063724-12063461 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 85 |
| Conread position: | 410-638 |
| Cow position: | chr13:11063775-11063553 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 450-652 |
| Cow position: | chr13:16255095-16254888 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 55, 30 |
Show alignments to all cow chromosomes.