Cow genome map

Conread name: Ss1.1-Spl1-SPL01C070055.5

Conread position: 1-292
Cow position: chr14:33675921-33676217 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 227
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 29, 90

Conread position: 1-816
Cow position: chr14:44377497-44378324 (view UCSC Genome Browser custom track)
Alignm length: 855
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 135

Conread position: 2-282
Cow position: chr14:12609291-12609571 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 138

Conread position: 239-585
Cow position: chr14:40738464-40738803 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 47, 17

Conread position: 242-652
Cow position: chr14:16919761-16919348 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 288
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 57, 24

Conread position: 313-585
Cow position: chr14:37223932-37224199 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 56

Conread position: 313-585
Cow position: chr14:44287220-44286950 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 87

Conread position: 313-586
Cow position: chr14:40340797-40341063 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 79

Conread position: 313-635
Cow position: chr14:44686074-44686396 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 89

Conread position: 313-644
Cow position: chr14:44256949-44256608 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 235
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 36, 98

Conread position: 313-644
Cow position: chr14:46519123-46519426 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 125, 31

Conread position: 313-720
Cow position: chr14:48825324-48825740 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 89

Conread position: 315-469
Cow position: chr14:45834177-45834326 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 117, 87

Conread position: 315-478
Cow position: chr14:17760867-17760711 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 117, 76

Conread position: 315-495
Cow position: chr14:45917674-45917849 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 74

Conread position: 315-506
Cow position: chr14:35386780-35386597 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 115, 85

Conread position: 315-562
Cow position: chr14:38815776-38815534 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 39

Conread position: 315-613
Cow position: chr14:38531706-38531412 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 72

Conread position: 315-642
Cow position: chr14:46529259-46529586 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 119, 21

Conread position: 315-644
Cow position: chr14:5511855-5512184 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 87

Conread position: 315-644
Cow position: chr14:13621106-13620792 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 24

Conread position: 315-644
Cow position: chr14:17685429-17685756 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 78

Conread position: 315-645
Cow position: chr14:13303054-13303387 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 81

Conread position: 315-645
Cow position: chr14:48254270-48253940 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 87

Conread position: 315-647
Cow position: chr14:13864055-13863729 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 315-647
Cow position: chr14:21743998-21744331 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 226
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 126, 9

Conread position: 315-648
Cow position: chr14:34043629-34043286 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 244
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 32, 40

Conread position: 315-650
Cow position: chr14:30596351-30596015 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 87

Conread position: 315-651
Cow position: chr14:30735234-30734902 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 37

Conread position: 315-652
Cow position: chr14:5529095-5529434 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 20

Conread position: 315-652
Cow position: chr14:11154133-11153796 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr14:12743039-12742701 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 87

Conread position: 315-652
Cow position: chr14:13273477-13273811 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 87

Conread position: 315-652
Cow position: chr14:13778987-13779325 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 62

Conread position: 315-652
Cow position: chr14:17001029-17000693 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 78

Conread position: 315-652
Cow position: chr14:20782489-20782828 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 76

Conread position: 315-652
Cow position: chr14:29777471-29777130 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 87

Conread position: 315-652
Cow position: chr14:50110600-50110940 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 79

Conread position: 315-659
Cow position: chr14:45302925-45302599 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 257
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 259, 87

Conread position: 315-730
Cow position: chr14:43558002-43558438 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 87

Conread position: 315-732
Cow position: chr14:22031389-22030973 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-816
Cow position: chr14:45081076-45081572 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 87

Conread position: 315-816
Cow position: chr14:45206343-45206845 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 87

Conread position: 316-811
Cow position: chr14:45161131-45161611 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 88

Conread position: 317-460
Cow position: chr14:33342166-33342305 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 114, 85

Conread position: 317-566
Cow position: chr14:46513573-46513807 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 19

Conread position: 317-583
Cow position: chr14:35366405-35366148 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 250, 19

Conread position: 317-585
Cow position: chr14:9101690-9101423 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 194
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 23, 87

Conread position: 317-592
Cow position: chr14:45029096-45028829 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 115, 85

Conread position: 317-644
Cow position: chr14:19328235-19327910 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 76

Conread position: 317-644
Cow position: chr14:44776018-44775678 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 243
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 115, 85

Conread position: 317-645
Cow position: chr14:47923144-47923476 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 247
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 105, 19

Conread position: 317-650
Cow position: chr14:45672017-45671683 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 81

Conread position: 317-651
Cow position: chr14:44226430-44226767 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 19

Conread position: 317-652
Cow position: chr14:750598-750948 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 25

Conread position: 317-652
Cow position: chr14:17491428-17491093 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 33

Conread position: 317-652
Cow position: chr14:23257387-23257725 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 72

Conread position: 317-721
Cow position: chr14:33393750-33393329 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-732
Cow position: chr14:50138626-50139031 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-810
Cow position: chr14:2284367-2284854 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 46

Conread position: 317-810
Cow position: chr14:9045594-9046091 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 63

Conread position: 317-816
Cow position: chr14:12610487-12610972 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 38

Conread position: 319-584
Cow position: chr14:45711955-45711697 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 72

Conread position: 319-645
Cow position: chr14:30584923-30584597 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 83

Conread position: 319-815
Cow position: chr14:44551924-44552407 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 85

Conread position: 321-492
Cow position: chr14:29047871-29047706 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 111, 82

Conread position: 321-662
Cow position: chr14:48970717-48971055 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 246
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 236, 80

Conread position: 324-652
Cow position: chr14:7472401-7472731 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 67

Conread position: 325-644
Cow position: chr14:33237082-33237386 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 209, 51

Conread position: 325-721
Cow position: chr14:41408928-41409324 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 287
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 107, 17

Conread position: 326-652
Cow position: chr14:16273260-16272930 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 78

Conread position: 330-645
Cow position: chr14:32446841-32447155 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 12

Conread position: 337-719
Cow position: chr14:38147067-38147458 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 279
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 181, 63

Conread position: 340-645
Cow position: chr14:48704635-48704939 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 92, 58

Conread position: 341-652
Cow position: chr14:15276174-15275862 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 57

Conread position: 351-721
Cow position: chr14:34776317-34776680 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 261
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 119, 41

Conread position: 383-645
Cow position: chr14:33676872-33677146 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 48, 98

Conread position: 396-626
Cow position: chr14:4862936-4862697 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 42, 85

Conread position: 396-644
Cow position: chr14:33401794-33402049 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 85

Conread position: 396-807
Cow position: chr14:23901390-23901802 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 85

Conread position: 396-810
Cow position: chr14:27977460-27977877 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 85

Conread position: 408-644
Cow position: chr14:190080-190325 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 24, 73

Conread position: 428-650
Cow position: chr14:35917469-35917239 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 135, 52

Conread position: 430-650
Cow position: chr14:12899241-12899466 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 136, 50

Conread position: 437-816
Cow position: chr14:16344005-16343627 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 43

Conread position: 440-652
Cow position: chr14:50393883-50393669 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 94, 40

Conread position: 441-652
Cow position: chr14:46392373-46392157 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 147, 39

Conread position: 465-816
Cow position: chr14:17760693-17760356 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 249
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 110, 15

Conread position: 475-585
Cow position: chr14:44288968-44288854 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 97
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 479-651
Cow position: chr14:35385884-35385704 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 83, 169

Conread position: 484-652
Cow position: chr14:29047496-29047319 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 78, 0

Show alignments to all cow chromosomes.