Cow genome map
Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
Conread position: | 1-297 |
Cow position: | chr16:29033388-29033684 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 214 |
Alignm E-value: | 7e-26 |
Alignm gaps (pig, cow): | 82, 27 |
Conread position: | 1-586 |
Cow position: | chr16:42739750-42739155 (view UCSC Genome Browser custom track) |
Alignm length: | 615 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 32 |
Conread position: | 2-301 |
Cow position: | chr16:49235476-49235190 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 219 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 21, 31 |
Conread position: | 31-275 |
Cow position: | chr16:18499338-18499094 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 184 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 58, 104 |
Conread position: | 31-298 |
Cow position: | chr16:25257306-25257574 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 189 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 58, 104 |
Conread position: | 31-319 |
Cow position: | chr16:5889901-5890181 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 208 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 129, 98 |
Conread position: | 31-328 |
Cow position: | chr16:49256753-49256455 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 216 |
Alignm E-value: | 5e-32 |
Alignm gaps (pig, cow): | 58, 198 |
Conread position: | 261-577 |
Cow position: | chr16:6943226-6943548 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 235 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 49, 150 |
Conread position: | 264-586 |
Cow position: | chr16:16271957-16271658 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 229 |
Alignm E-value: | 5e-32 |
Alignm gaps (pig, cow): | 9, 23 |
Conread position: | 264-645 |
Cow position: | chr16:28437754-28437367 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 271 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 26, 14 |
Conread position: | 265-816 |
Cow position: | chr16:25085246-25085797 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 380 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 34, 229 |
Conread position: | 310-586 |
Cow position: | chr16:49235145-49234877 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 210 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 123, 11 |
Conread position: | 310-644 |
Cow position: | chr16:29090596-29090268 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 230 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 123, 47 |
Conread position: | 312-816 |
Cow position: | chr16:15476526-15477022 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 79 |
Conread position: | 313-609 |
Cow position: | chr16:47473255-47473552 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 212 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 119, 91 |
Conread position: | 313-645 |
Cow position: | chr16:10437926-10438255 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 251, 75 |
Conread position: | 313-652 |
Cow position: | chr16:2411283-2410941 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 89 |
Conread position: | 313-652 |
Cow position: | chr16:34530006-34530338 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 89 |
Conread position: | 313-811 |
Cow position: | chr16:29033726-29034227 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 75 |
Conread position: | 315-585 |
Cow position: | chr16:15184490-15184744 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 202 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 116, 34 |
Conread position: | 315-585 |
Cow position: | chr16:26516730-26516463 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 184 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 38, 69 |
Conread position: | 315-586 |
Cow position: | chr16:2239053-2238798 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 194 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 207, 35 |
Conread position: | 315-615 |
Cow position: | chr16:23252819-23252520 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 73 |
Conread position: | 315-620 |
Cow position: | chr16:15492915-15493221 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 88 |
Conread position: | 315-620 |
Cow position: | chr16:15566427-15566735 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 79 |
Conread position: | 315-644 |
Cow position: | chr16:29046709-29047040 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 79 |
Conread position: | 315-645 |
Cow position: | chr16:40296491-40296158 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 79 |
Conread position: | 315-652 |
Cow position: | chr16:1567767-1567427 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 77 |
Conread position: | 315-652 |
Cow position: | chr16:2483454-2483114 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 76 |
Conread position: | 315-652 |
Cow position: | chr16:2727601-2727262 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 76 |
Conread position: | 315-652 |
Cow position: | chr16:4479297-4478957 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 79 |
Conread position: | 315-652 |
Cow position: | chr16:8816419-8816079 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 79 |
Conread position: | 315-652 |
Cow position: | chr16:10203752-10203413 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 76 |
Conread position: | 315-652 |
Cow position: | chr16:12538239-12537899 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 76 |
Conread position: | 315-652 |
Cow position: | chr16:23982997-23983335 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 79 |
Conread position: | 315-652 |
Cow position: | chr16:25341653-25341982 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 253, 79 |
Conread position: | 315-652 |
Cow position: | chr16:25441311-25441652 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 78 |
Conread position: | 315-652 |
Cow position: | chr16:25457778-25457438 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 79 |
Conread position: | 315-652 |
Cow position: | chr16:26663438-26663775 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 76 |
Conread position: | 315-652 |
Cow position: | chr16:28471416-28471076 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 77 |
Conread position: | 315-652 |
Cow position: | chr16:43897584-43897247 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 76 |
Conread position: | 315-731 |
Cow position: | chr16:31592227-31591794 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 88 |
Conread position: | 315-752 |
Cow position: | chr16:36232053-36231626 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 291 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 165, 86 |
Conread position: | 315-816 |
Cow position: | chr16:836732-837231 (view UCSC Genome Browser custom track) |
Alignm length: | 516 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 67 |
Conread position: | 315-816 |
Cow position: | chr16:14666126-14665629 (view UCSC Genome Browser custom track) |
Alignm length: | 514 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 79 |
Conread position: | 316-755 |
Cow position: | chr16:15054721-15054277 (view UCSC Genome Browser custom track) |
Alignm length: | 454 |
Alignm identity: | 283 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 116, 78 |
Conread position: | 317-537 |
Cow position: | chr16:18498629-18498420 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 172 |
Alignm E-value: | 9e-38 |
Alignm gaps (pig, cow): | 110, 73 |
Conread position: | 317-576 |
Cow position: | chr16:31832314-31832567 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 70 |
Conread position: | 317-583 |
Cow position: | chr16:5484008-5484269 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 85 |
Conread position: | 317-586 |
Cow position: | chr16:25188318-25188578 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 67 |
Conread position: | 317-586 |
Cow position: | chr16:53046036-53046302 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 210 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 85 |
Conread position: | 317-619 |
Cow position: | chr16:23808110-23808417 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 75 |
Conread position: | 317-643 |
Cow position: | chr16:25171040-25171365 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 237 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 30, 37 |
Conread position: | 317-646 |
Cow position: | chr16:407343-407014 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 85 |
Conread position: | 317-650 |
Cow position: | chr16:28197991-28197654 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 85 |
Conread position: | 317-651 |
Cow position: | chr16:32421-32757 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 84 |
Conread position: | 317-652 |
Cow position: | chr16:5661532-5661869 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 24 |
Conread position: | 317-652 |
Cow position: | chr16:25257625-25257962 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 86 |
Conread position: | 317-652 |
Cow position: | chr16:41163377-41163046 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 85 |
Conread position: | 317-730 |
Cow position: | chr16:9930623-9931057 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 86 |
Conread position: | 317-760 |
Cow position: | chr16:26650924-26651372 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 309 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 201, 83 |
Conread position: | 317-807 |
Cow position: | chr16:28170684-28170198 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 85 |
Conread position: | 319-650 |
Cow position: | chr16:4302648-4302316 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 70 |
Conread position: | 319-652 |
Cow position: | chr16:24105394-24105728 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 83 |
Conread position: | 321-582 |
Cow position: | chr16:25892409-25892663 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 195 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 111, 81 |
Conread position: | 329-652 |
Cow position: | chr16:27734073-27733766 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 234 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 235, 13 |
Conread position: | 331-645 |
Cow position: | chr16:15237447-15237739 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 53 |
Conread position: | 332-732 |
Cow position: | chr16:49256488-49256095 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 10 |
Conread position: | 343-652 |
Cow position: | chr16:30049211-30049510 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 231 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 88, 22 |
Conread position: | 350-731 |
Cow position: | chr16:1431907-1432312 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 52 |
Conread position: | 364-813 |
Cow position: | chr16:37456290-37455834 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 38 |
Conread position: | 383-589 |
Cow position: | chr16:29972745-29972545 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 148 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 177, 45 |
Conread position: | 396-554 |
Cow position: | chr16:51083518-51083677 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 121 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 12, 37 |
Conread position: | 396-650 |
Cow position: | chr16:43852357-43852106 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 84 |
Conread position: | 406-722 |
Cow position: | chr16:41562016-41562339 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 226 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 26, 68 |
Conread position: | 420-813 |
Cow position: | chr16:10375814-10375422 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 61 |
Conread position: | 427-638 |
Cow position: | chr16:19152087-19151868 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 172 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 142, 54 |
Conread position: | 433-650 |
Cow position: | chr16:28377016-28377241 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 174 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 129, 47 |
Conread position: | 436-652 |
Cow position: | chr16:11283111-11283335 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 177 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 126, 44 |
Conread position: | 459-816 |
Cow position: | chr16:23536063-23535710 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 241 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 105, 52 |
Conread position: | 461-652 |
Cow position: | chr16:26374420-26374617 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 150 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 108, 20 |
Conread position: | 464-650 |
Cow position: | chr16:21185447-21185638 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 147 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 98, 16 |
Conread position: | 504-645 |
Cow position: | chr16:41166902-41166752 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 118 |
Alignm E-value: | 7e-26 |
Alignm gaps (pig, cow): | 61, 0 |
Conread position: | 505-652 |
Cow position: | chr16:20753163-20753007 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 119 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 57, 0 |
Conread position: | 505-652 |
Cow position: | chr16:25155122-25154973 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 116 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 58, 49 |
Show alignments to all cow chromosomes.