Cow genome map

Conread name: Ss1.1-Spl1-SPL01C070055.5

Conread position: 1-297
Cow position: chr16:29033388-29033684 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 214
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 82, 27

Conread position: 1-586
Cow position: chr16:42739750-42739155 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 32

Conread position: 2-301
Cow position: chr16:49235476-49235190 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 31

Conread position: 31-275
Cow position: chr16:18499338-18499094 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 58, 104

Conread position: 31-298
Cow position: chr16:25257306-25257574 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 189
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 58, 104

Conread position: 31-319
Cow position: chr16:5889901-5890181 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 129, 98

Conread position: 31-328
Cow position: chr16:49256753-49256455 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 58, 198

Conread position: 261-577
Cow position: chr16:6943226-6943548 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 235
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 49, 150

Conread position: 264-586
Cow position: chr16:16271957-16271658 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 229
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 9, 23

Conread position: 264-645
Cow position: chr16:28437754-28437367 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 271
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 26, 14

Conread position: 265-816
Cow position: chr16:25085246-25085797 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 380
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 34, 229

Conread position: 310-586
Cow position: chr16:49235145-49234877 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 123, 11

Conread position: 310-644
Cow position: chr16:29090596-29090268 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 230
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 123, 47

Conread position: 312-816
Cow position: chr16:15476526-15477022 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 79

Conread position: 313-609
Cow position: chr16:47473255-47473552 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 119, 91

Conread position: 313-645
Cow position: chr16:10437926-10438255 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 75

Conread position: 313-652
Cow position: chr16:2411283-2410941 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 89

Conread position: 313-652
Cow position: chr16:34530006-34530338 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 89

Conread position: 313-811
Cow position: chr16:29033726-29034227 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 75

Conread position: 315-585
Cow position: chr16:15184490-15184744 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 116, 34

Conread position: 315-585
Cow position: chr16:26516730-26516463 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 69

Conread position: 315-586
Cow position: chr16:2239053-2238798 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 207, 35

Conread position: 315-615
Cow position: chr16:23252819-23252520 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 73

Conread position: 315-620
Cow position: chr16:15492915-15493221 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 88

Conread position: 315-620
Cow position: chr16:15566427-15566735 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 79

Conread position: 315-644
Cow position: chr16:29046709-29047040 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 79

Conread position: 315-645
Cow position: chr16:40296491-40296158 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 315-652
Cow position: chr16:1567767-1567427 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 77

Conread position: 315-652
Cow position: chr16:2483454-2483114 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr16:2727601-2727262 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr16:4479297-4478957 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 315-652
Cow position: chr16:8816419-8816079 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 315-652
Cow position: chr16:10203752-10203413 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr16:12538239-12537899 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr16:23982997-23983335 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 79

Conread position: 315-652
Cow position: chr16:25341653-25341982 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 79

Conread position: 315-652
Cow position: chr16:25441311-25441652 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 78

Conread position: 315-652
Cow position: chr16:25457778-25457438 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 315-652
Cow position: chr16:26663438-26663775 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr16:28471416-28471076 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 77

Conread position: 315-652
Cow position: chr16:43897584-43897247 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-731
Cow position: chr16:31592227-31591794 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 88

Conread position: 315-752
Cow position: chr16:36232053-36231626 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 291
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 165, 86

Conread position: 315-816
Cow position: chr16:836732-837231 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 67

Conread position: 315-816
Cow position: chr16:14666126-14665629 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 79

Conread position: 316-755
Cow position: chr16:15054721-15054277 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 283
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 116, 78

Conread position: 317-537
Cow position: chr16:18498629-18498420 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 172
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 110, 73

Conread position: 317-576
Cow position: chr16:31832314-31832567 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 70

Conread position: 317-583
Cow position: chr16:5484008-5484269 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 85

Conread position: 317-586
Cow position: chr16:25188318-25188578 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 67

Conread position: 317-586
Cow position: chr16:53046036-53046302 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 85

Conread position: 317-619
Cow position: chr16:23808110-23808417 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 75

Conread position: 317-643
Cow position: chr16:25171040-25171365 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 237
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 30, 37

Conread position: 317-646
Cow position: chr16:407343-407014 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 85

Conread position: 317-650
Cow position: chr16:28197991-28197654 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-651
Cow position: chr16:32421-32757 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 84

Conread position: 317-652
Cow position: chr16:5661532-5661869 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 24

Conread position: 317-652
Cow position: chr16:25257625-25257962 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 86

Conread position: 317-652
Cow position: chr16:41163377-41163046 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-730
Cow position: chr16:9930623-9931057 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 86

Conread position: 317-760
Cow position: chr16:26650924-26651372 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 309
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 201, 83

Conread position: 317-807
Cow position: chr16:28170684-28170198 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 319-650
Cow position: chr16:4302648-4302316 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 70

Conread position: 319-652
Cow position: chr16:24105394-24105728 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 83

Conread position: 321-582
Cow position: chr16:25892409-25892663 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 195
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 111, 81

Conread position: 329-652
Cow position: chr16:27734073-27733766 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 235, 13

Conread position: 331-645
Cow position: chr16:15237447-15237739 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 53

Conread position: 332-732
Cow position: chr16:49256488-49256095 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 10

Conread position: 343-652
Cow position: chr16:30049211-30049510 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 88, 22

Conread position: 350-731
Cow position: chr16:1431907-1432312 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 52

Conread position: 364-813
Cow position: chr16:37456290-37455834 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 38

Conread position: 383-589
Cow position: chr16:29972745-29972545 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 148
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 177, 45

Conread position: 396-554
Cow position: chr16:51083518-51083677 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 12, 37

Conread position: 396-650
Cow position: chr16:43852357-43852106 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 84

Conread position: 406-722
Cow position: chr16:41562016-41562339 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 226
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 26, 68

Conread position: 420-813
Cow position: chr16:10375814-10375422 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 61

Conread position: 427-638
Cow position: chr16:19152087-19151868 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 142, 54

Conread position: 433-650
Cow position: chr16:28377016-28377241 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 174
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 129, 47

Conread position: 436-652
Cow position: chr16:11283111-11283335 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 126, 44

Conread position: 459-816
Cow position: chr16:23536063-23535710 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 241
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 105, 52

Conread position: 461-652
Cow position: chr16:26374420-26374617 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 108, 20

Conread position: 464-650
Cow position: chr16:21185447-21185638 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 98, 16

Conread position: 504-645
Cow position: chr16:41166902-41166752 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 505-652
Cow position: chr16:20753163-20753007 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 505-652
Cow position: chr16:25155122-25154973 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 49

Show alignments to all cow chromosomes.