Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 1-222 |
| Cow position: | chr17:20401997-20402226 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 1-222 |
| Cow position: | chr17:22557918-22558144 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 20-297 |
| Cow position: | chr17:18300463-18300181 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 11 |
| Conread position: | 106-295 |
| Cow position: | chr17:4082082-4082273 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 242-642 |
| Cow position: | chr17:6001253-6000856 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 68, 61 |
| Conread position: | 247-652 |
| Cow position: | chr17:43988691-43989098 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 64 |
| Conread position: | 293-528 |
| Cow position: | chr17:42265161-42265391 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 8, 44 |
| Conread position: | 311-624 |
| Cow position: | chr17:14307809-14307492 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 247, 89 |
| Conread position: | 315-489 |
| Cow position: | chr17:19269103-19268935 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-575 |
| Cow position: | chr17:6076449-6076707 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 315-585 |
| Cow position: | chr17:13695728-13695467 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 117, 59 |
| Conread position: | 315-585 |
| Cow position: | chr17:15850662-15850929 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 315-643 |
| Cow position: | chr17:4060363-4060689 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 315-644 |
| Cow position: | chr17:2579879-2580212 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-644 |
| Cow position: | chr17:5226881-5227211 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 87 |
| Conread position: | 315-644 |
| Cow position: | chr17:6068820-6069146 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 11 |
| Conread position: | 315-644 |
| Cow position: | chr17:11087460-11087133 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 78 |
| Conread position: | 315-644 |
| Cow position: | chr17:15324086-15324418 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 77 |
| Conread position: | 315-652 |
| Cow position: | chr17:250424-250759 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 315-652 |
| Cow position: | chr17:3642572-3642235 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 73 |
| Conread position: | 315-652 |
| Cow position: | chr17:6260107-6260447 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-652 |
| Cow position: | chr17:16857260-16856921 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 30 |
| Conread position: | 315-652 |
| Cow position: | chr17:18103421-18103090 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 315-652 |
| Cow position: | chr17:24029735-24029407 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 69 |
| Conread position: | 315-732 |
| Cow position: | chr17:2174146-2174539 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 267, 33 |
| Conread position: | 315-732 |
| Cow position: | chr17:40805082-40805507 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-740 |
| Cow position: | chr17:20087483-20087044 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 87 |
| Conread position: | 317-476 |
| Cow position: | chr17:43952303-43952149 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 114, 85 |
| Conread position: | 317-586 |
| Cow position: | chr17:20183690-20183946 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 84 |
| Conread position: | 317-589 |
| Cow position: | chr17:11376524-11376255 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 317-619 |
| Cow position: | chr17:15156705-15156405 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-627 |
| Cow position: | chr17:20665466-20665152 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 75 |
| Conread position: | 317-644 |
| Cow position: | chr17:228048-227719 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 77 |
| Conread position: | 317-645 |
| Cow position: | chr17:151612-151283 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr17:1382554-1382223 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr17:15436051-15436387 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr17:20402669-20403016 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 253 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 25, 87 |
| Conread position: | 317-652 |
| Cow position: | chr17:1880356-1880695 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 253 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 118, 31 |
| Conread position: | 317-652 |
| Cow position: | chr17:2262362-2262701 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 317-652 |
| Cow position: | chr17:6119968-6120309 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 85 |
| Conread position: | 317-652 |
| Cow position: | chr17:8209366-8209705 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 86 |
| Conread position: | 317-652 |
| Cow position: | chr17:14216766-14216436 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 77 |
| Conread position: | 317-652 |
| Cow position: | chr17:23324194-23323856 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr17:24782427-24782757 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 56 |
| Conread position: | 317-652 |
| Cow position: | chr17:31767779-31767444 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-659 |
| Cow position: | chr17:19019838-19020179 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 19 |
| Conread position: | 317-807 |
| Cow position: | chr17:34156388-34156863 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 85 |
| Conread position: | 317-808 |
| Cow position: | chr17:15143107-15142612 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-815 |
| Cow position: | chr17:22132496-22132978 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 72 |
| Conread position: | 318-643 |
| Cow position: | chr17:4082329-4082627 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 318-816 |
| Cow position: | chr17:14894421-14894914 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 84 |
| Conread position: | 319-816 |
| Cow position: | chr17:14040767-14040284 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 69 |
| Conread position: | 321-643 |
| Cow position: | chr17:11026541-11026211 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 111, 79 |
| Conread position: | 321-644 |
| Cow position: | chr17:3708511-3708186 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 36 |
| Conread position: | 321-644 |
| Cow position: | chr17:18194095-18194402 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 321-645 |
| Cow position: | chr17:1657578-1657258 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 234, 73 |
| Conread position: | 332-645 |
| Cow position: | chr17:18300118-18299806 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 351-645 |
| Cow position: | chr17:9081146-9080849 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 396-810 |
| Cow position: | chr17:2247735-2247322 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 36, 86 |
| Conread position: | 411-665 |
| Cow position: | chr17:25897372-25897630 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 431-728 |
| Cow position: | chr17:2168872-2169179 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 142, 13 |
| Conread position: | 440-650 |
| Cow position: | chr17:11783225-11783440 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 148, 40 |
| Conread position: | 456-652 |
| Cow position: | chr17:181694-181896 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 479-586 |
| Cow position: | chr17:2148650-2148757 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 481-652 |
| Cow position: | chr17:14238880-14239059 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 83, 167 |
| Conread position: | 485-652 |
| Cow position: | chr17:20081435-20081266 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 487-816 |
| Cow position: | chr17:19268407-19268076 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 77, 176 |
| Conread position: | 502-652 |
| Cow position: | chr17:15371399-15371557 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 146 |
| Conread position: | 514-652 |
| Cow position: | chr17:20100023-20099880 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 59 |
Show alignments to all cow chromosomes.