Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 242-645 |
| Cow position: | chr18:54023757-54023337 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 68, 14 |
| Conread position: | 261-652 |
| Cow position: | chr18:16079095-16079477 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 43 |
| Conread position: | 315-585 |
| Cow position: | chr18:37505533-37505797 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-606 |
| Cow position: | chr18:29765445-29765739 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 315-621 |
| Cow position: | chr18:55991270-55990980 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 247, 29 |
| Conread position: | 315-626 |
| Cow position: | chr18:51481307-51481620 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 315-644 |
| Cow position: | chr18:23798118-23798446 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 76 |
| Conread position: | 315-652 |
| Cow position: | chr18:14130863-14131199 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 315-652 |
| Cow position: | chr18:14416450-14416791 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-652 |
| Cow position: | chr18:16088618-16088953 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr18:25351221-25351562 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 88 |
| Conread position: | 315-652 |
| Cow position: | chr18:27837844-27837502 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr18:32652671-32653023 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 167 |
| Conread position: | 315-652 |
| Cow position: | chr18:33269296-33269631 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-652 |
| Cow position: | chr18:36508805-36509145 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 76 |
| Conread position: | 315-652 |
| Cow position: | chr18:52651390-52651723 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr18:54270980-54271307 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 79 |
| Conread position: | 315-814 |
| Cow position: | chr18:33336337-33336836 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 78 |
| Conread position: | 315-815 |
| Cow position: | chr18:16176146-16175655 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 74 |
| Conread position: | 317-586 |
| Cow position: | chr18:8169176-8169442 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 115, 76 |
| Conread position: | 317-620 |
| Cow position: | chr18:16721852-16721547 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 115, 38 |
| Conread position: | 317-644 |
| Cow position: | chr18:27987538-27987871 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 317-645 |
| Cow position: | chr18:22602955-22603284 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 81 |
| Conread position: | 317-652 |
| Cow position: | chr18:51342154-51342492 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr18:51462612-51462277 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-791 |
| Cow position: | chr18:24040264-24039788 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 82 |
| Conread position: | 317-807 |
| Cow position: | chr18:33953107-33952627 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 317-810 |
| Cow position: | chr18:11274638-11274150 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-810 |
| Cow position: | chr18:55088454-55087964 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 86 |
| Conread position: | 317-811 |
| Cow position: | chr18:41840350-41839851 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 76 |
| Conread position: | 317-811 |
| Cow position: | chr18:51660815-51661298 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 85 |
| Conread position: | 318-644 |
| Cow position: | chr18:40478858-40479187 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 76 |
| Conread position: | 319-624 |
| Cow position: | chr18:36256748-36256451 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 151, 83 |
| Conread position: | 321-652 |
| Cow position: | chr18:33750494-33750819 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 323-652 |
| Cow position: | chr18:54171057-54170725 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 76 |
| Conread position: | 324-651 |
| Cow position: | chr18:19352852-19353176 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 329-708 |
| Cow position: | chr18:25363705-25364089 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 334-502 |
| Cow position: | chr18:54004001-54004163 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 98, 69 |
| Conread position: | 342-645 |
| Cow position: | chr18:28973393-28973085 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 60 |
| Conread position: | 353-645 |
| Cow position: | chr18:51275530-51275237 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 366-587 |
| Cow position: | chr18:32838344-32838560 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 140, 38 |
| Conread position: | 439-732 |
| Cow position: | chr18:29237535-29237826 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 464-728 |
| Cow position: | chr18:17673981-17673707 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 103, 17 |
Show alignments to all cow chromosomes.