Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 1-222 |
| Cow position: | chr19:44532577-44532815 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 29, 131 |
| Conread position: | 31-293 |
| Cow position: | chr19:352488-352226 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 107-297 |
| Cow position: | chr19:32222781-32222592 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 134-593 |
| Cow position: | chr19:189703-190165 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 317 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 150-579 |
| Cow position: | chr19:377293-376878 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 198, 66 |
| Conread position: | 313-811 |
| Cow position: | chr19:2273911-2273421 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 75 |
| Conread position: | 313-816 |
| Cow position: | chr19:3138411-3138896 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 89 |
| Conread position: | 314-645 |
| Cow position: | chr19:341695-342022 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 88 |
| Conread position: | 315-585 |
| Cow position: | chr19:27037082-27036820 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 252, 62 |
| Conread position: | 315-607 |
| Cow position: | chr19:39669033-39668746 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 315-610 |
| Cow position: | chr19:10956754-10956460 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 10 |
| Conread position: | 315-644 |
| Cow position: | chr19:4386088-4386429 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 32, 93 |
| Conread position: | 315-644 |
| Cow position: | chr19:35385275-35384946 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 315-644 |
| Cow position: | chr19:40851961-40851637 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 83 |
| Conread position: | 315-645 |
| Cow position: | chr19:204433-204763 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr19:172684-173020 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 20 |
| Conread position: | 315-652 |
| Cow position: | chr19:438964-438625 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 26 |
| Conread position: | 315-652 |
| Cow position: | chr19:33873903-33874236 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 72 |
| Conread position: | 315-652 |
| Cow position: | chr19:33942078-33942415 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-652 |
| Cow position: | chr19:35980619-35980952 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 247, 27 |
| Conread position: | 315-652 |
| Cow position: | chr19:39185069-39184728 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 315-652 |
| Cow position: | chr19:39390985-39391321 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 61 |
| Conread position: | 315-816 |
| Cow position: | chr19:893131-892637 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 77 |
| Conread position: | 316-644 |
| Cow position: | chr19:5729307-5729638 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 78 |
| Conread position: | 317-585 |
| Cow position: | chr19:136533-136277 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 50 |
| Conread position: | 317-586 |
| Cow position: | chr19:28593736-28593997 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 317-644 |
| Cow position: | chr19:28581182-28580856 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 85 |
| Conread position: | 317-645 |
| Cow position: | chr19:75774-75447 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 31 |
| Conread position: | 317-645 |
| Cow position: | chr19:7488790-7489118 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 317-650 |
| Cow position: | chr19:20105183-20105518 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 114 |
| Conread position: | 317-650 |
| Cow position: | chr19:43144186-43144518 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 317-652 |
| Cow position: | chr19:168128-167790 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr19:5901022-5900692 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 317-652 |
| Cow position: | chr19:27052037-27051694 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 76 |
| Conread position: | 317-652 |
| Cow position: | chr19:52151358-52151023 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-810 |
| Cow position: | chr19:773068-773558 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-810 |
| Cow position: | chr19:32211601-32211115 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 67 |
| Conread position: | 317-816 |
| Cow position: | chr19:40887269-40886779 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 84 |
| Conread position: | 318-652 |
| Cow position: | chr19:7342540-7342877 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 84 |
| Conread position: | 329-652 |
| Cow position: | chr19:12773604-12773928 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 65 |
| Conread position: | 331-651 |
| Cow position: | chr19:39095535-39095852 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 332-642 |
| Cow position: | chr19:32203639-32203946 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 183, 56 |
| Conread position: | 334-652 |
| Cow position: | chr19:674745-674434 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 5, 33 |
| Conread position: | 353-735 |
| Cow position: | chr19:162593-162223 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 80, 49 |
| Conread position: | 395-525 |
| Cow position: | chr19:50685238-50685366 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 400-812 |
| Cow position: | chr19:28406153-28405745 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 410-586 |
| Cow position: | chr19:35377930-35378109 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 429-650 |
| Cow position: | chr19:28567340-28567115 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 436-652 |
| Cow position: | chr19:53844162-53844399 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 445-632 |
| Cow position: | chr19:38804-38993 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 35 |
| Conread position: | 540-652 |
| Cow position: | chr19:40816878-40816757 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
Show alignments to all cow chromosomes.