Cow genome map
Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
Conread position: | 1-297 |
Cow position: | chr21:359571-359870 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 204 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 29, 135 |
Conread position: | 31-292 |
Cow position: | chr21:4184071-4184331 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 191 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 41, 35 |
Conread position: | 242-626 |
Cow position: | chr21:2502338-2502729 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 69 |
Conread position: | 311-548 |
Cow position: | chr21:21518065-21518294 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 170 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 121, 80 |
Conread position: | 313-559 |
Cow position: | chr21:25975822-25976062 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 168 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 41, 37 |
Conread position: | 313-586 |
Cow position: | chr21:27565945-27566220 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 84 |
Conread position: | 313-587 |
Cow position: | chr21:33252057-33252321 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 210 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 122, 8 |
Conread position: | 313-644 |
Cow position: | chr21:4589442-4589118 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 88 |
Conread position: | 313-650 |
Cow position: | chr21:11453112-11452775 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 73 |
Conread position: | 313-652 |
Cow position: | chr21:4077381-4077720 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 43 |
Conread position: | 313-652 |
Cow position: | chr21:37371789-37372125 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 89 |
Conread position: | 315-575 |
Cow position: | chr21:18819617-18819358 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 199 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 101, 87 |
Conread position: | 315-585 |
Cow position: | chr21:27070715-27070448 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 76 |
Conread position: | 315-585 |
Cow position: | chr21:48116653-48116917 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 195 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 116, 78 |
Conread position: | 315-586 |
Cow position: | chr21:27282939-27283206 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 76 |
Conread position: | 315-620 |
Cow position: | chr21:31559107-31558804 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 76 |
Conread position: | 315-636 |
Cow position: | chr21:30562355-30562676 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 76 |
Conread position: | 315-644 |
Cow position: | chr21:29630-29958 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 80 |
Conread position: | 315-644 |
Cow position: | chr21:1192304-1192636 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 79 |
Conread position: | 315-644 |
Cow position: | chr21:39087552-39087881 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 236 |
Alignm E-value: | 7e-37 |
Alignm gaps (pig, cow): | 155, 77 |
Conread position: | 315-645 |
Cow position: | chr21:28735782-28736115 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 174, 87 |
Conread position: | 315-646 |
Cow position: | chr21:23603097-23603418 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 241 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 32, 39 |
Conread position: | 315-646 |
Cow position: | chr21:23812724-23813057 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 87 |
Conread position: | 315-652 |
Cow position: | chr21:1287672-1287334 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 27 |
Conread position: | 315-652 |
Cow position: | chr21:2883195-2882854 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 78 |
Conread position: | 315-652 |
Cow position: | chr21:10567221-10567561 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 76 |
Conread position: | 315-652 |
Cow position: | chr21:10850629-10850964 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 76 |
Conread position: | 315-652 |
Cow position: | chr21:13313318-13313647 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 86 |
Conread position: | 315-652 |
Cow position: | chr21:30599375-30599038 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 87 |
Conread position: | 315-652 |
Cow position: | chr21:47949612-47949945 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 50 |
Conread position: | 315-816 |
Cow position: | chr21:3779321-3779807 (view UCSC Genome Browser custom track) |
Alignm length: | 515 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 76 |
Conread position: | 315-816 |
Cow position: | chr21:35144309-35144797 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 87 |
Conread position: | 316-652 |
Cow position: | chr21:146476-146813 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 75 |
Conread position: | 317-567 |
Cow position: | chr21:7266977-7266740 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 187 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 115, 74 |
Conread position: | 317-584 |
Cow position: | chr21:359916-360166 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 193 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 114, 76 |
Conread position: | 317-584 |
Cow position: | chr21:2511443-2511707 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 72 |
Conread position: | 317-626 |
Cow position: | chr21:2475993-2475681 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 85 |
Conread position: | 317-640 |
Cow position: | chr21:21915241-21915565 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 239 |
Alignm E-value: | 5e-35 |
Alignm gaps (pig, cow): | 115, 55 |
Conread position: | 317-645 |
Cow position: | chr21:11406448-11406117 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 85 |
Conread position: | 317-650 |
Cow position: | chr21:37046168-37046504 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 85 |
Conread position: | 317-652 |
Cow position: | chr21:2711052-2711374 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 74 |
Conread position: | 317-652 |
Cow position: | chr21:6622138-6622475 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 54 |
Conread position: | 317-652 |
Cow position: | chr21:11506144-11506481 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 65 |
Conread position: | 317-652 |
Cow position: | chr21:39425611-39425947 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 17 |
Conread position: | 317-652 |
Cow position: | chr21:40271126-40270788 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 77 |
Conread position: | 317-652 |
Cow position: | chr21:47941407-47941742 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 33 |
Conread position: | 317-653 |
Cow position: | chr21:4091196-4091535 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 69 |
Conread position: | 317-810 |
Cow position: | chr21:12055453-12054970 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 86 |
Conread position: | 317-811 |
Cow position: | chr21:2540533-2540042 (view UCSC Genome Browser custom track) |
Alignm length: | 514 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 249, 77 |
Conread position: | 319-652 |
Cow position: | chr21:467442-467762 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 247, 83 |
Conread position: | 321-645 |
Cow position: | chr21:4094058-4094382 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 233 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 112, 8 |
Conread position: | 324-652 |
Cow position: | chr21:23861881-23862206 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 239, 70 |
Conread position: | 327-525 |
Cow position: | chr21:28255760-28255961 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 151 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 17, 76 |
Conread position: | 329-652 |
Cow position: | chr21:2416775-2417099 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 13 |
Conread position: | 341-652 |
Cow position: | chr21:26637625-26637319 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 221, 61 |
Conread position: | 358-585 |
Cow position: | chr21:10283455-10283678 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 165 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 74, 37 |
Conread position: | 386-816 |
Cow position: | chr21:18817952-18817514 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 305 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 12, 98 |
Conread position: | 409-645 |
Cow position: | chr21:25782275-25782520 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 179 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 23, 39 |
Conread position: | 440-652 |
Cow position: | chr21:5840600-5840380 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 170 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 124, 40 |
Conread position: | 441-652 |
Cow position: | chr21:5015626-5015421 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 169 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 193, 35 |
Conread position: | 446-810 |
Cow position: | chr21:46916347-46916709 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 255 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 116, 30 |
Conread position: | 456-650 |
Cow position: | chr21:27149594-27149793 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 157 |
Alignm E-value: | 8.99999e-40 |
Alignm gaps (pig, cow): | 132, 24 |
Conread position: | 458-614 |
Cow position: | chr21:37323908-37323750 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 123 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 12, 7 |
Conread position: | 472-644 |
Cow position: | chr21:445822-446000 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 137 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 46, 8 |
Show alignments to all cow chromosomes.