Cow genome map

Conread name: Ss1.1-Spl1-SPL01C070055.5

Conread position: 1-297
Cow position: chr21:359571-359870 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 204
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 135

Conread position: 31-292
Cow position: chr21:4184071-4184331 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 35

Conread position: 242-626
Cow position: chr21:2502338-2502729 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 69

Conread position: 311-548
Cow position: chr21:21518065-21518294 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 121, 80

Conread position: 313-559
Cow position: chr21:25975822-25976062 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 37

Conread position: 313-586
Cow position: chr21:27565945-27566220 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 84

Conread position: 313-587
Cow position: chr21:33252057-33252321 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 122, 8

Conread position: 313-644
Cow position: chr21:4589442-4589118 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 88

Conread position: 313-650
Cow position: chr21:11453112-11452775 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 73

Conread position: 313-652
Cow position: chr21:4077381-4077720 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 43

Conread position: 313-652
Cow position: chr21:37371789-37372125 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 89

Conread position: 315-575
Cow position: chr21:18819617-18819358 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 101, 87

Conread position: 315-585
Cow position: chr21:27070715-27070448 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-585
Cow position: chr21:48116653-48116917 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 195
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 116, 78

Conread position: 315-586
Cow position: chr21:27282939-27283206 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-620
Cow position: chr21:31559107-31558804 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 76

Conread position: 315-636
Cow position: chr21:30562355-30562676 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 76

Conread position: 315-644
Cow position: chr21:29630-29958 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 80

Conread position: 315-644
Cow position: chr21:1192304-1192636 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 79

Conread position: 315-644
Cow position: chr21:39087552-39087881 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 155, 77

Conread position: 315-645
Cow position: chr21:28735782-28736115 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 87

Conread position: 315-646
Cow position: chr21:23603097-23603418 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 32, 39

Conread position: 315-646
Cow position: chr21:23812724-23813057 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 87

Conread position: 315-652
Cow position: chr21:1287672-1287334 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 27

Conread position: 315-652
Cow position: chr21:2883195-2882854 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 78

Conread position: 315-652
Cow position: chr21:10567221-10567561 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 76

Conread position: 315-652
Cow position: chr21:10850629-10850964 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr21:13313318-13313647 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 86

Conread position: 315-652
Cow position: chr21:30599375-30599038 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 87

Conread position: 315-652
Cow position: chr21:47949612-47949945 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 50

Conread position: 315-816
Cow position: chr21:3779321-3779807 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-816
Cow position: chr21:35144309-35144797 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 87

Conread position: 316-652
Cow position: chr21:146476-146813 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 75

Conread position: 317-567
Cow position: chr21:7266977-7266740 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 115, 74

Conread position: 317-584
Cow position: chr21:359916-360166 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 114, 76

Conread position: 317-584
Cow position: chr21:2511443-2511707 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 72

Conread position: 317-626
Cow position: chr21:2475993-2475681 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-640
Cow position: chr21:21915241-21915565 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 115, 55

Conread position: 317-645
Cow position: chr21:11406448-11406117 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 85

Conread position: 317-650
Cow position: chr21:37046168-37046504 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 85

Conread position: 317-652
Cow position: chr21:2711052-2711374 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 74

Conread position: 317-652
Cow position: chr21:6622138-6622475 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 54

Conread position: 317-652
Cow position: chr21:11506144-11506481 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 65

Conread position: 317-652
Cow position: chr21:39425611-39425947 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 17

Conread position: 317-652
Cow position: chr21:40271126-40270788 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 77

Conread position: 317-652
Cow position: chr21:47941407-47941742 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 33

Conread position: 317-653
Cow position: chr21:4091196-4091535 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 69

Conread position: 317-810
Cow position: chr21:12055453-12054970 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 86

Conread position: 317-811
Cow position: chr21:2540533-2540042 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 77

Conread position: 319-652
Cow position: chr21:467442-467762 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 83

Conread position: 321-645
Cow position: chr21:4094058-4094382 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 112, 8

Conread position: 324-652
Cow position: chr21:23861881-23862206 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 70

Conread position: 327-525
Cow position: chr21:28255760-28255961 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 76

Conread position: 329-652
Cow position: chr21:2416775-2417099 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 13

Conread position: 341-652
Cow position: chr21:26637625-26637319 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 61

Conread position: 358-585
Cow position: chr21:10283455-10283678 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 74, 37

Conread position: 386-816
Cow position: chr21:18817952-18817514 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 305
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 12, 98

Conread position: 409-645
Cow position: chr21:25782275-25782520 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 23, 39

Conread position: 440-652
Cow position: chr21:5840600-5840380 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 124, 40

Conread position: 441-652
Cow position: chr21:5015626-5015421 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 169
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 193, 35

Conread position: 446-810
Cow position: chr21:46916347-46916709 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 116, 30

Conread position: 456-650
Cow position: chr21:27149594-27149793 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 132, 24

Conread position: 458-614
Cow position: chr21:37323908-37323750 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 7

Conread position: 472-644
Cow position: chr21:445822-446000 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 8

Show alignments to all cow chromosomes.