Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 1-296 |
| Cow position: | chr22:23853695-23853991 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 1-595 |
| Cow position: | chr22:1283292-1282711 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 1-645 |
| Cow position: | chr22:35907362-35906698 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 135 |
| Conread position: | 242-644 |
| Cow position: | chr22:34599679-34600098 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 296-650 |
| Cow position: | chr22:8135752-8135397 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 238, 24 |
| Conread position: | 313-528 |
| Cow position: | chr22:13918206-13918420 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 118, 89 |
| Conread position: | 313-652 |
| Cow position: | chr22:44934354-44934696 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 81 |
| Conread position: | 315-476 |
| Cow position: | chr22:1322502-1322657 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 315-522 |
| Cow position: | chr22:37132800-37133000 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 117, 26 |
| Conread position: | 315-541 |
| Cow position: | chr22:35942405-35942188 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 315-545 |
| Cow position: | chr22:1269414-1269194 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 117, 71 |
| Conread position: | 315-624 |
| Cow position: | chr22:6502757-6502451 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 87 |
| Conread position: | 315-643 |
| Cow position: | chr22:17328360-17328028 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 87 |
| Conread position: | 315-644 |
| Cow position: | chr22:8739840-8739510 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 86 |
| Conread position: | 315-644 |
| Cow position: | chr22:21589713-21590041 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 78 |
| Conread position: | 315-645 |
| Cow position: | chr22:36269607-36269920 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 315-645 |
| Cow position: | chr22:42991551-42991884 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-651 |
| Cow position: | chr22:48004913-48005251 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 36 |
| Conread position: | 315-652 |
| Cow position: | chr22:560325-559989 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 87 |
| Conread position: | 315-652 |
| Cow position: | chr22:1520635-1520308 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 53 |
| Conread position: | 315-652 |
| Cow position: | chr22:5308480-5308811 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 88 |
| Conread position: | 315-652 |
| Cow position: | chr22:10909462-10909125 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 315-652 |
| Cow position: | chr22:11032125-11032464 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 315-652 |
| Cow position: | chr22:15313576-15313237 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 77 |
| Conread position: | 315-652 |
| Cow position: | chr22:31313719-31314058 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 315-652 |
| Cow position: | chr22:34168710-34169050 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 315-652 |
| Cow position: | chr22:36861154-36860818 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 73 |
| Conread position: | 315-652 |
| Cow position: | chr22:37072700-37072370 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 315-652 |
| Cow position: | chr22:44396822-44397162 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 73 |
| Conread position: | 315-708 |
| Cow position: | chr22:24536124-24536523 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 315-721 |
| Cow position: | chr22:12731296-12730880 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 315-813 |
| Cow position: | chr22:326791-326305 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 17 |
| Conread position: | 315-816 |
| Cow position: | chr22:18816006-18815513 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 317-506 |
| Cow position: | chr22:11781772-11781589 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 84 |
| Conread position: | 317-507 |
| Cow position: | chr22:16814261-16814445 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 115, 67 |
| Conread position: | 317-575 |
| Cow position: | chr22:14208034-14207785 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 115, 91 |
| Conread position: | 317-644 |
| Cow position: | chr22:693998-694329 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 60 |
| Conread position: | 317-644 |
| Cow position: | chr22:39469141-39468817 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 76 |
| Conread position: | 317-650 |
| Cow position: | chr22:3277981-3277649 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 85 |
| Conread position: | 317-650 |
| Cow position: | chr22:5232907-5232570 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr22:6021038-6021372 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 85 |
| Conread position: | 317-650 |
| Cow position: | chr22:27309402-27309066 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr22:537475-537812 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 34 |
| Conread position: | 317-652 |
| Cow position: | chr22:1879167-1879505 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr22:18027654-18027993 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 75 |
| Conread position: | 317-652 |
| Cow position: | chr22:24950471-24950809 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr22:27284407-27284738 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 317-652 |
| Cow position: | chr22:35671981-35671643 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 75 |
| Conread position: | 317-652 |
| Cow position: | chr22:44369251-44368915 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 80 |
| Conread position: | 317-732 |
| Cow position: | chr22:23854038-23854455 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 48 |
| Conread position: | 317-807 |
| Cow position: | chr22:3306020-3305553 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 85 |
| Conread position: | 317-810 |
| Cow position: | chr22:20240468-20239981 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 27 |
| Conread position: | 317-816 |
| Cow position: | chr22:19143310-19142822 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 70 |
| Conread position: | 318-528 |
| Cow position: | chr22:525312-525108 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 114, 84 |
| Conread position: | 319-583 |
| Cow position: | chr22:46630665-46630405 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 114, 75 |
| Conread position: | 319-586 |
| Cow position: | chr22:44352597-44352344 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 113, 49 |
| Conread position: | 319-652 |
| Cow position: | chr22:31334654-31334323 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 72 |
| Conread position: | 321-643 |
| Cow position: | chr22:5940910-5940600 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 321-810 |
| Cow position: | chr22:14629796-14630280 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 81 |
| Conread position: | 324-587 |
| Cow position: | chr22:1806247-1806507 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 107, 18 |
| Conread position: | 329-652 |
| Cow position: | chr22:36184143-36184469 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 73 |
| Conread position: | 332-572 |
| Cow position: | chr22:291762-291529 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 336-586 |
| Cow position: | chr22:36580404-36580154 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 338-650 |
| Cow position: | chr22:42988958-42989273 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 64 |
| Conread position: | 341-586 |
| Cow position: | chr22:36591094-36590867 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 6, 13 |
| Conread position: | 353-816 |
| Cow position: | chr22:44457466-44457922 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 366-807 |
| Cow position: | chr22:44491457-44491893 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 36 |
| Conread position: | 394-574 |
| Cow position: | chr22:11640175-11640001 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 396-578 |
| Cow position: | chr22:2627327-2627147 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 432-652 |
| Cow position: | chr22:45930167-45930389 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 38 |
| Conread position: | 451-624 |
| Cow position: | chr22:41419015-41418842 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 466-644 |
| Cow position: | chr22:41239895-41240077 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 101, 15 |
| Conread position: | 471-800 |
| Cow position: | chr22:11804534-11804205 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 91, 9 |
| Conread position: | 484-652 |
| Cow position: | chr22:9287123-9287299 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 84, 160 |
| Conread position: | 489-644 |
| Cow position: | chr22:36129454-36129618 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 531-651 |
| Cow position: | chr22:3802779-3802899 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.