Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 43-212 |
| Cow position: | chr23:16615354-16615184 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 135, 86 |
| Conread position: | 311-647 |
| Cow position: | chr23:4510453-4510774 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 275, 44 |
| Conread position: | 312-652 |
| Cow position: | chr23:15219527-15219192 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 79 |
| Conread position: | 313-478 |
| Cow position: | chr23:22146876-22146716 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 119, 89 |
| Conread position: | 313-650 |
| Cow position: | chr23:29403564-29403231 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 119, 60 |
| Conread position: | 313-721 |
| Cow position: | chr23:2341465-2341880 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 80 |
| Conread position: | 315-496 |
| Cow position: | chr23:25683661-25683486 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 88 |
| Conread position: | 315-536 |
| Cow position: | chr23:11778868-11779078 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 315-548 |
| Cow position: | chr23:4434832-4435057 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 117, 73 |
| Conread position: | 315-591 |
| Cow position: | chr23:14965372-14965099 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 315-595 |
| Cow position: | chr23:2794857-2794576 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 79 |
| Conread position: | 315-618 |
| Cow position: | chr23:16616466-16616161 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 315-619 |
| Cow position: | chr23:1024646-1024331 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 166 |
| Conread position: | 315-620 |
| Cow position: | chr23:2757974-2758282 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 75 |
| Conread position: | 315-626 |
| Cow position: | chr23:3014773-3015086 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 73 |
| Conread position: | 315-644 |
| Cow position: | chr23:4889052-4889389 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 71 |
| Conread position: | 315-644 |
| Cow position: | chr23:15177450-15177779 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 76 |
| Conread position: | 315-644 |
| Cow position: | chr23:16615059-16614732 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 87 |
| Conread position: | 315-644 |
| Cow position: | chr23:36030998-36030669 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-645 |
| Cow position: | chr23:28108035-28108356 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 78 |
| Conread position: | 315-646 |
| Cow position: | chr23:2781834-2781509 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 88 |
| Conread position: | 315-648 |
| Cow position: | chr23:28077746-28078077 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 80 |
| Conread position: | 315-652 |
| Cow position: | chr23:2716768-2717105 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 72 |
| Conread position: | 315-652 |
| Cow position: | chr23:4817395-4817734 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 79 |
| Conread position: | 315-652 |
| Cow position: | chr23:19489921-19490255 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 78 |
| Conread position: | 315-652 |
| Cow position: | chr23:28025042-28025382 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 74 |
| Conread position: | 315-652 |
| Cow position: | chr23:28913772-28914108 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 77 |
| Conread position: | 315-721 |
| Cow position: | chr23:26837040-26837426 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 312, 88 |
| Conread position: | 315-815 |
| Cow position: | chr23:28368147-28367656 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 315-816 |
| Cow position: | chr23:27399879-27400375 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 88 |
| Conread position: | 317-499 |
| Cow position: | chr23:31594869-31594694 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 317-553 |
| Cow position: | chr23:17785947-17785717 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 317-580 |
| Cow position: | chr23:4752977-4753228 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 236, 19 |
| Conread position: | 317-602 |
| Cow position: | chr23:20302586-20302864 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 85 |
| Conread position: | 317-645 |
| Cow position: | chr23:13510039-13510366 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 317-645 |
| Cow position: | chr23:27970915-27971246 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr23:2312863-2312532 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 28 |
| Conread position: | 317-650 |
| Cow position: | chr23:31447190-31447526 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 317-651 |
| Cow position: | chr23:28217665-28218002 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr23:4360204-4360520 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 255, 72 |
| Conread position: | 317-652 |
| Cow position: | chr23:4640248-4639910 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 77 |
| Conread position: | 317-652 |
| Cow position: | chr23:5874265-5873937 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 67 |
| Conread position: | 317-802 |
| Cow position: | chr23:23830335-23830815 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 317-810 |
| Cow position: | chr23:19950212-19949738 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 319-732 |
| Cow position: | chr23:20155832-20155406 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 72 |
| Conread position: | 321-567 |
| Cow position: | chr23:15877381-15877149 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 175, 11 |
| Conread position: | 321-643 |
| Cow position: | chr23:14974170-14973860 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 15 |
| Conread position: | 321-645 |
| Cow position: | chr23:14948360-14948035 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 111, 71 |
| Conread position: | 321-652 |
| Cow position: | chr23:966956-966626 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 70 |
| Conread position: | 325-645 |
| Cow position: | chr23:7364326-7364632 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 247, 63 |
| Conread position: | 336-561 |
| Cow position: | chr23:22874788-22874579 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 95, 57 |
| Conread position: | 336-614 |
| Cow position: | chr23:27169530-27169806 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 95, 126 |
| Conread position: | 338-636 |
| Cow position: | chr23:1402093-1401806 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 338-652 |
| Cow position: | chr23:3880687-3880367 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 10, 43 |
| Conread position: | 342-816 |
| Cow position: | chr23:29451916-29451473 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 90, 60 |
| Conread position: | 356-645 |
| Cow position: | chr23:3861309-3861015 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 364-652 |
| Cow position: | chr23:3706528-3706833 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 126 |
| Conread position: | 366-585 |
| Cow position: | chr23:16499021-16498806 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 388-600 |
| Cow position: | chr23:12887535-12887327 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 416-645 |
| Cow position: | chr23:618977-618754 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 419-652 |
| Cow position: | chr23:2026610-2026367 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 13, 57 |
| Conread position: | 441-652 |
| Cow position: | chr23:2575462-2575663 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 110, 16 |
| Conread position: | 444-565 |
| Cow position: | chr23:38794702-38794822 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.