Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 1-297 |
| Cow position: | chr24:36708375-36708674 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 91, 24 |
| Conread position: | 2-297 |
| Cow position: | chr24:16648870-16648569 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 2-297 |
| Cow position: | chr24:36559643-36559346 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 85, 213 |
| Conread position: | 308-647 |
| Cow position: | chr24:12110239-12109915 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 260, 34 |
| Conread position: | 311-644 |
| Cow position: | chr24:38638003-38638325 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 119, 91 |
| Conread position: | 313-524 |
| Cow position: | chr24:6336313-6336506 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 79 |
| Conread position: | 313-643 |
| Cow position: | chr24:6669685-6669354 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 119, 29 |
| Conread position: | 313-644 |
| Cow position: | chr24:1449717-1450034 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 252, 49 |
| Conread position: | 313-644 |
| Cow position: | chr24:6538420-6538745 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 119, 23 |
| Conread position: | 313-650 |
| Cow position: | chr24:14754543-14754202 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 89 |
| Conread position: | 313-651 |
| Cow position: | chr24:33933830-33934171 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 89 |
| Conread position: | 313-652 |
| Cow position: | chr24:29187747-29188088 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 78 |
| Conread position: | 313-810 |
| Cow position: | chr24:9188274-9187786 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 81 |
| Conread position: | 313-810 |
| Cow position: | chr24:12484861-12484370 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 89 |
| Conread position: | 315-585 |
| Cow position: | chr24:12130510-12130248 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-587 |
| Cow position: | chr24:12796749-12796498 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 118, 74 |
| Conread position: | 315-644 |
| Cow position: | chr24:12335310-12334969 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 164 |
| Conread position: | 315-650 |
| Cow position: | chr24:12205846-12205520 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 73 |
| Conread position: | 315-652 |
| Cow position: | chr24:148153-147812 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 315-652 |
| Cow position: | chr24:4415064-4414734 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 73 |
| Conread position: | 315-652 |
| Cow position: | chr24:12086665-12087004 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 79 |
| Conread position: | 315-652 |
| Cow position: | chr24:22971552-22971890 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-732 |
| Cow position: | chr24:17696512-17696084 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 80 |
| Conread position: | 315-816 |
| Cow position: | chr24:14390095-14389589 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 345 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 317-560 |
| Cow position: | chr24:7061855-7062092 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 69 |
| Conread position: | 317-563 |
| Cow position: | chr24:14872497-14872257 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 38 |
| Conread position: | 317-586 |
| Cow position: | chr24:33738879-33738612 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 317-586 |
| Cow position: | chr24:40549334-40549592 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 115, 23 |
| Conread position: | 317-609 |
| Cow position: | chr24:16648521-16648224 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 317-621 |
| Cow position: | chr24:22793637-22793944 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 317-650 |
| Cow position: | chr24:6084532-6084864 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr24:6646161-6646497 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr24:29305862-29305525 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 85 |
| Conread position: | 317-650 |
| Cow position: | chr24:43814225-43814560 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 33 |
| Conread position: | 317-652 |
| Cow position: | chr24:6024644-6024306 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr24:13188634-13188969 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-732 |
| Cow position: | chr24:36559294-36558874 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 77 |
| Conread position: | 317-810 |
| Cow position: | chr24:23505401-23504917 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 69 |
| Conread position: | 317-810 |
| Cow position: | chr24:44017994-44018481 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 317-816 |
| Cow position: | chr24:19833853-19834345 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 320-652 |
| Cow position: | chr24:5992763-5992427 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 82 |
| Conread position: | 321-644 |
| Cow position: | chr24:16472365-16472682 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 322-652 |
| Cow position: | chr24:6660029-6659694 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 80 |
| Conread position: | 330-588 |
| Cow position: | chr24:9091804-9091553 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 334-816 |
| Cow position: | chr24:6059376-6059853 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 70 |
| Conread position: | 335-585 |
| Cow position: | chr24:14704208-14703952 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 86, 145 |
| Conread position: | 335-667 |
| Cow position: | chr24:6328834-6328500 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 68 |
| Conread position: | 336-626 |
| Cow position: | chr24:23184980-23184703 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 193, 65 |
| Conread position: | 336-652 |
| Cow position: | chr24:12237723-12238041 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 71 |
| Conread position: | 348-577 |
| Cow position: | chr24:35870189-35869957 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 57, 136 |
| Conread position: | 350-644 |
| Cow position: | chr24:9544557-9544854 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 353-652 |
| Cow position: | chr24:19702003-19702283 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 219, 49 |
| Conread position: | 363-650 |
| Cow position: | chr24:12700312-12700021 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 78, 37 |
| Conread position: | 396-645 |
| Cow position: | chr24:6065180-6064933 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 398-614 |
| Cow position: | chr24:6145945-6146164 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 164, 83 |
| Conread position: | 402-585 |
| Cow position: | chr24:1437165-1436984 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 78 |
| Conread position: | 413-645 |
| Cow position: | chr24:31114232-31114463 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 65 |
| Conread position: | 432-652 |
| Cow position: | chr24:11866903-11866676 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 44 |
| Conread position: | 432-801 |
| Cow position: | chr24:8030860-8031229 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 130, 48 |
| Conread position: | 440-807 |
| Cow position: | chr24:6435055-6435424 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 265 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 122, 222 |
| Conread position: | 467-721 |
| Cow position: | chr24:12150688-12150433 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 479-732 |
| Cow position: | chr24:36708977-36709250 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 81, 250 |
| Conread position: | 488-650 |
| Cow position: | chr24:44325981-44326152 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 511-650 |
| Cow position: | chr24:21960303-21960155 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.