Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 1-205 |
| Cow position: | chr28:11356977-11356764 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 59-286 |
| Cow position: | chr28:24704369-24704602 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 76 |
| Conread position: | 134-607 |
| Cow position: | chr28:10497804-10497307 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 345 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 313-586 |
| Cow position: | chr28:26489723-26489991 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 133, 102 |
| Conread position: | 313-617 |
| Cow position: | chr28:5798167-5798468 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 313-652 |
| Cow position: | chr28:5113876-5113537 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 78 |
| Conread position: | 313-652 |
| Cow position: | chr28:17666876-17666543 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 41 |
| Conread position: | 313-816 |
| Cow position: | chr28:7789531-7789036 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 89 |
| Conread position: | 315-486 |
| Cow position: | chr28:29820158-29820322 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 116, 83 |
| Conread position: | 315-509 |
| Cow position: | chr28:10581561-10581372 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 315-515 |
| Cow position: | chr28:8720874-8720680 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 315-537 |
| Cow position: | chr28:2084016-2084229 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-567 |
| Cow position: | chr28:34594402-34594648 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 72 |
| Conread position: | 315-585 |
| Cow position: | chr28:782817-783082 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-586 |
| Cow position: | chr28:5813433-5813701 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 84 |
| Conread position: | 315-644 |
| Cow position: | chr28:5751281-5750947 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 73 |
| Conread position: | 315-645 |
| Cow position: | chr28:33259065-33259390 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 315-652 |
| Cow position: | chr28:1167458-1167118 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-652 |
| Cow position: | chr28:1505289-1505628 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr28:2988819-2988479 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 87 |
| Conread position: | 315-652 |
| Cow position: | chr28:5566569-5566913 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 83 |
| Conread position: | 315-652 |
| Cow position: | chr28:5937900-5938243 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 315-652 |
| Cow position: | chr28:12409804-12409467 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr28:32791956-32791616 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 315-652 |
| Cow position: | chr28:33252736-33253062 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 315-719 |
| Cow position: | chr28:5765182-5765592 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 76 |
| Conread position: | 315-721 |
| Cow position: | chr28:3191824-3191405 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 34 |
| Conread position: | 315-732 |
| Cow position: | chr28:22232982-22232562 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 85 |
| Conread position: | 315-732 |
| Cow position: | chr28:26425827-26425396 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-814 |
| Cow position: | chr28:10646968-10646487 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 315-815 |
| Cow position: | chr28:24668032-24668533 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 346 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 117, 55 |
| Conread position: | 315-816 |
| Cow position: | chr28:1814443-1813949 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 25 |
| Conread position: | 315-816 |
| Cow position: | chr28:7002414-7002910 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 26 |
| Conread position: | 315-816 |
| Cow position: | chr28:12150727-12151220 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-816 |
| Cow position: | chr28:13460393-13460888 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 76 |
| Conread position: | 315-816 |
| Cow position: | chr28:17388907-17389396 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 316-813 |
| Cow position: | chr28:1386979-1386484 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 25 |
| Conread position: | 317-565 |
| Cow position: | chr28:10229794-10229561 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 317-608 |
| Cow position: | chr28:3020324-3020041 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 317-616 |
| Cow position: | chr28:7822677-7822979 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-644 |
| Cow position: | chr28:7740905-7741222 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 317-644 |
| Cow position: | chr28:18520020-18519695 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 54 |
| Conread position: | 317-650 |
| Cow position: | chr28:6538842-6538507 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 85 |
| Conread position: | 317-652 |
| Cow position: | chr28:1953549-1953889 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr28:6779917-6779580 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 65 |
| Conread position: | 317-652 |
| Cow position: | chr28:22260725-22260393 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 74 |
| Conread position: | 317-730 |
| Cow position: | chr28:485143-484736 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 115, 61 |
| Conread position: | 317-810 |
| Cow position: | chr28:14750965-14751452 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 77 |
| Conread position: | 317-816 |
| Cow position: | chr28:10071708-10072189 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 319-810 |
| Cow position: | chr28:2724501-2724015 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 83 |
| Conread position: | 321-459 |
| Cow position: | chr28:7880952-7881085 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 321-652 |
| Cow position: | chr28:24589277-24589611 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 68 |
| Conread position: | 326-635 |
| Cow position: | chr28:8379268-8379579 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 76 |
| Conread position: | 336-659 |
| Cow position: | chr28:6656070-6655770 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 339-644 |
| Cow position: | chr28:18100776-18100472 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 93, 43 |
| Conread position: | 339-651 |
| Cow position: | chr28:21359923-21360238 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 50 |
| Conread position: | 342-647 |
| Cow position: | chr28:24304559-24304259 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 343-702 |
| Cow position: | chr28:7810951-7811290 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 89, 60 |
| Conread position: | 352-644 |
| Cow position: | chr28:28473104-28473399 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 80, 36 |
| Conread position: | 364-732 |
| Cow position: | chr28:15683752-15684097 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 68, 114 |
| Conread position: | 396-816 |
| Cow position: | chr28:14704891-14704473 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 296 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 402-651 |
| Cow position: | chr28:25169571-25169316 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 62 |
| Conread position: | 408-644 |
| Cow position: | chr28:18147241-18147002 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 478-652 |
| Cow position: | chr28:32330166-32329980 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 479-645 |
| Cow position: | chr28:29820582-29820757 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 479-652 |
| Cow position: | chr28:32627166-32626989 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 499-644 |
| Cow position: | chr28:7881845-7881695 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 500-816 |
| Cow position: | chr28:8720349-8720032 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 518-645 |
| Cow position: | chr28:17732441-17732305 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.