Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 23-292 |
| Cow position: | chr29:802869-802591 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 111 |
| Conread position: | 296-585 |
| Cow position: | chr29:15949181-15948906 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 67, 108 |
| Conread position: | 309-644 |
| Cow position: | chr29:9961664-9962001 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 311-644 |
| Cow position: | chr29:4634009-4633687 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 311-645 |
| Cow position: | chr29:9619801-9620139 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 92 |
| Conread position: | 312-652 |
| Cow position: | chr29:2840990-2840654 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 90 |
| Conread position: | 313-585 |
| Cow position: | chr29:23976223-23976491 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 58 |
| Conread position: | 313-652 |
| Cow position: | chr29:25932155-25931814 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 78 |
| Conread position: | 313-810 |
| Cow position: | chr29:18856562-18856075 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 81 |
| Conread position: | 313-816 |
| Cow position: | chr29:5957987-5958482 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 89 |
| Conread position: | 315-449 |
| Cow position: | chr29:42650655-42650785 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 88 |
| Conread position: | 315-471 |
| Cow position: | chr29:410136-409986 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 315-493 |
| Cow position: | chr29:6266111-6265938 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 315-567 |
| Cow position: | chr29:42802515-42802761 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 27, 88 |
| Conread position: | 315-620 |
| Cow position: | chr29:32540198-32540501 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-644 |
| Cow position: | chr29:5982328-5981997 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 87 |
| Conread position: | 315-644 |
| Cow position: | chr29:34799420-34799089 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 77 |
| Conread position: | 315-645 |
| Cow position: | chr29:251157-251489 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 118, 73 |
| Conread position: | 315-645 |
| Cow position: | chr29:8062106-8061770 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 315-645 |
| Cow position: | chr29:14085745-14085413 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 80 |
| Conread position: | 315-645 |
| Cow position: | chr29:14586305-14586639 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-645 |
| Cow position: | chr29:16022920-16023255 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 315-645 |
| Cow position: | chr29:35263085-35263409 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 315-645 |
| Cow position: | chr29:43322943-43323276 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 87 |
| Conread position: | 315-650 |
| Cow position: | chr29:10823579-10823252 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr29:2100235-2100574 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr29:2690290-2690630 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 315-652 |
| Cow position: | chr29:7430829-7430494 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr29:20251548-20251888 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 72 |
| Conread position: | 315-652 |
| Cow position: | chr29:26164433-26164103 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-652 |
| Cow position: | chr29:40502594-40502254 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 86 |
| Conread position: | 315-652 |
| Cow position: | chr29:45460104-45460445 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 315-721 |
| Cow position: | chr29:45586978-45586560 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 78 |
| Conread position: | 315-816 |
| Cow position: | chr29:9643370-9642882 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 78 |
| Conread position: | 315-816 |
| Cow position: | chr29:39079321-39078826 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 50 |
| Conread position: | 317-509 |
| Cow position: | chr29:16110800-16110986 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-556 |
| Cow position: | chr29:19653494-19653740 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 142, 76 |
| Conread position: | 317-581 |
| Cow position: | chr29:13582453-13582708 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 84 |
| Conread position: | 317-584 |
| Cow position: | chr29:802540-802281 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 317-587 |
| Cow position: | chr29:7844716-7844983 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-625 |
| Cow position: | chr29:19622856-19622546 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 85 |
| Conread position: | 317-644 |
| Cow position: | chr29:669672-669343 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 72 |
| Conread position: | 317-650 |
| Cow position: | chr29:15894465-15894129 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 75 |
| Conread position: | 317-650 |
| Cow position: | chr29:27980537-27980204 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr29:35297255-35297574 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 84 |
| Conread position: | 317-652 |
| Cow position: | chr29:10647859-10647527 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 317-652 |
| Cow position: | chr29:38227371-38227702 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 317-721 |
| Cow position: | chr29:610227-609808 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 39 |
| Conread position: | 317-807 |
| Cow position: | chr29:19885455-19885937 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 25 |
| Conread position: | 317-810 |
| Cow position: | chr29:15968476-15967988 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-810 |
| Cow position: | chr29:27249958-27249470 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-810 |
| Cow position: | chr29:34925864-34926351 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 86 |
| Conread position: | 317-811 |
| Cow position: | chr29:48081-47578 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 317-813 |
| Cow position: | chr29:21426638-21426148 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 86 |
| Conread position: | 318-652 |
| Cow position: | chr29:105427-105759 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 321-524 |
| Cow position: | chr29:6212930-6213127 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 41, 84 |
| Conread position: | 324-810 |
| Cow position: | chr29:31181797-31182277 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 78 |
| Conread position: | 330-627 |
| Cow position: | chr29:21264052-21264348 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 137, 6 |
| Conread position: | 342-645 |
| Cow position: | chr29:32583967-32583661 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 355-633 |
| Cow position: | chr29:7856932-7857207 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 204, 50 |
| Conread position: | 363-652 |
| Cow position: | chr29:32559324-32559031 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 396-645 |
| Cow position: | chr29:24336321-24336071 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 68 |
| Conread position: | 398-645 |
| Cow position: | chr29:31024311-31024063 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 411-646 |
| Cow position: | chr29:16173854-16173605 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 425-644 |
| Cow position: | chr29:32803931-32804155 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 136, 6 |
| Conread position: | 495-652 |
| Cow position: | chr29:6265717-6265551 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 501-652 |
| Cow position: | chr29:2949773-2949612 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 517-650 |
| Cow position: | chr29:15785381-15785239 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 517-652 |
| Cow position: | chr29:8664104-8664247 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 108 |
Show alignments to all cow chromosomes.