Cow genome map

Conread name: Ss1.1-Spl1-SPL01C070055.5

Conread position: 1-311
Cow position:
Alignm length: 323
Alignm identity: 224
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 18, 32

Conread position: 1-601
Cow position:
Alignm length: 608
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 83

Conread position: 19-539
Cow position:
Alignm length: 535
Alignm identity: 340
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 63, 73

Conread position: 31-297
Cow position:
Alignm length: 279
Alignm identity: 194
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 58, 106

Conread position: 31-297
Cow position:
Alignm length: 274
Alignm identity: 183
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 58, 192

Conread position: 31-442
Cow position:
Alignm length: 439
Alignm identity: 297
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 58, 104

Conread position: 35-816
Cow position:
Alignm length: 817
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 31

Conread position: 90-346
Cow position:
Alignm length: 264
Alignm identity: 175
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 92, 39

Conread position: 90-499
Cow position:
Alignm length: 414
Alignm identity: 262
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 80, 39

Conread position: 134-585
Cow position:
Alignm length: 473
Alignm identity: 320
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 46, 23

Conread position: 242-645
Cow position:
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 24

Conread position: 252-650
Cow position:
Alignm length: 410
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 151

Conread position: 271-816
Cow position:
Alignm length: 558
Alignm identity: 345
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 292, 29

Conread position: 288-652
Cow position:
Alignm length: 370
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 15

Conread position: 295-816
Cow position:
Alignm length: 548
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 12

Conread position: 308-652
Cow position:
Alignm length: 353
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 94

Conread position: 311-490
Cow position:
Alignm length: 182
Alignm identity: 141
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 120, 82

Conread position: 311-581
Cow position:
Alignm length: 273
Alignm identity: 201
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 119, 56

Conread position: 311-586
Cow position:
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 155

Conread position: 313-466
Cow position:
Alignm length: 155
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 118, 81

Conread position: 313-477
Cow position:
Alignm length: 168
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 32

Conread position: 313-645
Cow position:
Alignm length: 347
Alignm identity: 234
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 37, 89

Conread position: 313-651
Cow position:
Alignm length: 348
Alignm identity: 242
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 119, 32

Conread position: 313-652
Cow position:
Alignm length: 351
Alignm identity: 261
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 119, 28

Conread position: 313-741
Cow position:
Alignm length: 466
Alignm identity: 313
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 24, 83

Conread position: 313-814
Cow position:
Alignm length: 512
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 89

Conread position: 313-815
Cow position:
Alignm length: 517
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 172

Conread position: 313-816
Cow position:
Alignm length: 522
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 99

Conread position: 313-816
Cow position:
Alignm length: 516
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 89

Conread position: 313-816
Cow position:
Alignm length: 518
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 89

Conread position: 313-816
Cow position:
Alignm length: 517
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 28

Conread position: 314-652
Cow position:
Alignm length: 352
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 88

Conread position: 315-565
Cow position:
Alignm length: 254
Alignm identity: 158
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 34, 78

Conread position: 315-568
Cow position:
Alignm length: 256
Alignm identity: 194
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 115, 80

Conread position: 315-574
Cow position:
Alignm length: 264
Alignm identity: 175
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 195, 108

Conread position: 315-585
Cow position:
Alignm length: 273
Alignm identity: 204
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 117, 79

Conread position: 315-620
Cow position:
Alignm length: 316
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 69

Conread position: 315-640
Cow position:
Alignm length: 335
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 35

Conread position: 315-641
Cow position:
Alignm length: 332
Alignm identity: 219
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 117, 78

Conread position: 315-643
Cow position:
Alignm length: 337
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 88

Conread position: 315-644
Cow position:
Alignm length: 339
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 76

Conread position: 315-644
Cow position:
Alignm length: 339
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 56

Conread position: 315-645
Cow position:
Alignm length: 341
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 44

Conread position: 315-646
Cow position:
Alignm length: 342
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 78

Conread position: 315-647
Cow position:
Alignm length: 336
Alignm identity: 208
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 116, 76

Conread position: 315-651
Cow position:
Alignm length: 344
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 89

Conread position: 315-652
Cow position:
Alignm length: 345
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 64

Conread position: 315-652
Cow position:
Alignm length: 346
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 79

Conread position: 315-652
Cow position:
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 75

Conread position: 315-652
Cow position:
Alignm length: 349
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 80

Conread position: 315-652
Cow position:
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 73

Conread position: 315-652
Cow position:
Alignm length: 348
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 72

Conread position: 315-652
Cow position:
Alignm length: 348
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-661
Cow position:
Alignm length: 356
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 26

Conread position: 315-728
Cow position:
Alignm length: 436
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-732
Cow position:
Alignm length: 444
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 87

Conread position: 315-816
Cow position:
Alignm length: 516
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 71

Conread position: 315-816
Cow position:
Alignm length: 512
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 79

Conread position: 315-816
Cow position:
Alignm length: 518
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 81

Conread position: 315-816
Cow position:
Alignm length: 515
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 78

Conread position: 316-561
Cow position:
Alignm length: 247
Alignm identity: 183
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 116, 26

Conread position: 316-645
Cow position:
Alignm length: 342
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 78

Conread position: 317-476
Cow position:
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 86

Conread position: 317-503
Cow position:
Alignm length: 187
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 71, 0

Conread position: 317-540
Cow position:
Alignm length: 225
Alignm identity: 163
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 114, 84

Conread position: 317-567
Cow position:
Alignm length: 252
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-586
Cow position:
Alignm length: 274
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 67

Conread position: 317-613
Cow position:
Alignm length: 305
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 86

Conread position: 317-619
Cow position:
Alignm length: 314
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 86

Conread position: 317-644
Cow position:
Alignm length: 342
Alignm identity: 241
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 115, 59

Conread position: 317-650
Cow position:
Alignm length: 335
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-650
Cow position:
Alignm length: 355
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 84

Conread position: 317-650
Cow position:
Alignm length: 345
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 83

Conread position: 317-650
Cow position:
Alignm length: 335
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 72

Conread position: 317-650
Cow position:
Alignm length: 341
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-650
Cow position:
Alignm length: 344
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-652
Cow position:
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 317-652
Cow position:
Alignm length: 345
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-652
Cow position:
Alignm length: 347
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 33

Conread position: 317-652
Cow position:
Alignm length: 341
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 75

Conread position: 317-652
Cow position:
Alignm length: 346
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 85

Conread position: 317-652
Cow position:
Alignm length: 348
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 83

Conread position: 317-652
Cow position:
Alignm length: 346
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-652
Cow position:
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 85

Conread position: 317-652
Cow position:
Alignm length: 343
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 81

Conread position: 317-652
Cow position:
Alignm length: 346
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 76

Conread position: 317-652
Cow position:
Alignm length: 351
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 85

Conread position: 317-652
Cow position:
Alignm length: 345
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 76

Conread position: 317-652
Cow position:
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 49

Conread position: 317-652
Cow position:
Alignm length: 346
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 86

Conread position: 317-652
Cow position:
Alignm length: 353
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 83

Conread position: 317-721
Cow position:
Alignm length: 423
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 85

Conread position: 317-732
Cow position:
Alignm length: 441
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 24

Conread position: 317-755
Cow position:
Alignm length: 451
Alignm identity: 290
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 19, 75

Conread position: 317-807
Cow position:
Alignm length: 505
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 82

Conread position: 317-810
Cow position:
Alignm length: 508
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-810
Cow position:
Alignm length: 507
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 85

Conread position: 317-810
Cow position:
Alignm length: 507
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-810
Cow position:
Alignm length: 504
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 74

Conread position: 318-567
Cow position:
Alignm length: 251
Alignm identity: 176
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 114, 30

Conread position: 320-652
Cow position:
Alignm length: 343
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 73

Conread position: 321-567
Cow position:
Alignm length: 249
Alignm identity: 174
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 22, 82

Conread position: 321-611
Cow position:
Alignm length: 301
Alignm identity: 210
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 104, 71

Conread position: 321-644
Cow position:
Alignm length: 339
Alignm identity: 242
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 14, 77

Conread position: 321-645
Cow position:
Alignm length: 335
Alignm identity: 242
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 44, 55

Conread position: 321-645
Cow position:
Alignm length: 343
Alignm identity: 245
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 13, 72

Conread position: 323-721
Cow position:
Alignm length: 429
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 33

Conread position: 324-811
Cow position:
Alignm length: 503
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 57

Conread position: 324-816
Cow position:
Alignm length: 505
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 33

Conread position: 325-611
Cow position:
Alignm length: 298
Alignm identity: 204
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 60, 29

Conread position: 325-816
Cow position:
Alignm length: 501
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 77

Conread position: 334-511
Cow position:
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 98, 69

Conread position: 335-549
Cow position:
Alignm length: 216
Alignm identity: 155
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 97, 16

Conread position: 336-645
Cow position:
Alignm length: 319
Alignm identity: 214
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 224, 57

Conread position: 336-652
Cow position:
Alignm length: 324
Alignm identity: 224
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 101, 57

Conread position: 337-621
Cow position:
Alignm length: 295
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 65

Conread position: 338-645
Cow position:
Alignm length: 312
Alignm identity: 218
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 84, 55

Conread position: 353-733
Cow position:
Alignm length: 396
Alignm identity: 267
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 79, 41

Conread position: 364-524
Cow position:
Alignm length: 162
Alignm identity: 125
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 68, 25

Conread position: 364-622
Cow position:
Alignm length: 270
Alignm identity: 203
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 68, 24

Conread position: 364-644
Cow position:
Alignm length: 282
Alignm identity: 202
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 69, 30

Conread position: 383-644
Cow position:
Alignm length: 266
Alignm identity: 180
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 205, 93

Conread position: 395-815
Cow position:
Alignm length: 422
Alignm identity: 282
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 37, 87

Conread position: 396-645
Cow position:
Alignm length: 259
Alignm identity: 174
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 85

Conread position: 401-652
Cow position:
Alignm length: 262
Alignm identity: 194
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 82

Conread position: 410-643
Cow position:
Alignm length: 244
Alignm identity: 175
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 22, 71

Conread position: 440-652
Cow position:
Alignm length: 223
Alignm identity: 177
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 123, 40

Conread position: 440-787
Cow position:
Alignm length: 354
Alignm identity: 246
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 142, 15

Conread position: 464-650
Cow position:
Alignm length: 190
Alignm identity: 147
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 98, 16

Conread position: 467-652
Cow position:
Alignm length: 190
Alignm identity: 148
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 95, 13

Conread position: 480-650
Cow position:
Alignm length: 180
Alignm identity: 139
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 84, 0

Conread position: 485-585
Cow position:
Alignm length: 104
Alignm identity: 88
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 486-816
Cow position:
Alignm length: 345
Alignm identity: 234
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 9, 177

Conread position: 498-652
Cow position:
Alignm length: 162
Alignm identity: 134
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 41, 30

Show alignments to all cow chromosomes.