Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01C070055.5 |
| Conread position: | 151-730 |
| Cow position: | chr4:968719-968123 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 399 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 12, 98 |
| Conread position: | 176-586 |
| Cow position: | chr4:14821604-14821179 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 58 |
| Conread position: | 311-652 |
| Cow position: | chr4:31669380-31669721 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 80 |
| Conread position: | 313-474 |
| Cow position: | chr4:12607560-12607406 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 313-568 |
| Cow position: | chr4:28831450-28831688 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 111, 78 |
| Conread position: | 313-595 |
| Cow position: | chr4:6211807-6211531 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 113, 80 |
| Conread position: | 313-652 |
| Cow position: | chr4:36896478-36896818 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 78 |
| Conread position: | 313-652 |
| Cow position: | chr4:60264054-60263717 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 89 |
| Conread position: | 315-455 |
| Cow position: | chr4:33493937-33494072 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-460 |
| Cow position: | chr4:12587411-12587551 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-567 |
| Cow position: | chr4:19251666-19251905 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 315-585 |
| Cow position: | chr4:17926142-17925874 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-611 |
| Cow position: | chr4:45049186-45048887 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-615 |
| Cow position: | chr4:16359994-16360287 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 116, 78 |
| Conread position: | 315-619 |
| Cow position: | chr4:11111310-11111012 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 315-619 |
| Cow position: | chr4:44725197-44725504 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-633 |
| Cow position: | chr4:4176901-4177216 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 315-643 |
| Cow position: | chr4:6490252-6489926 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 76 |
| Conread position: | 315-643 |
| Cow position: | chr4:43881221-43881542 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-644 |
| Cow position: | chr4:25599390-25599058 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-644 |
| Cow position: | chr4:48026509-48026840 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 87 |
| Conread position: | 315-645 |
| Cow position: | chr4:356021-356348 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 58 |
| Conread position: | 315-645 |
| Cow position: | chr4:11837526-11837208 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 315-645 |
| Cow position: | chr4:33072715-33072382 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-652 |
| Cow position: | chr4:31565192-31564858 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 50 |
| Conread position: | 315-652 |
| Cow position: | chr4:43319534-43319198 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-661 |
| Cow position: | chr4:46664628-46664976 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 315-732 |
| Cow position: | chr4:57984093-57984528 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 79 |
| Conread position: | 315-811 |
| Cow position: | chr4:12241105-12240614 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 76 |
| Conread position: | 315-815 |
| Cow position: | chr4:18517008-18517499 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 57 |
| Conread position: | 315-816 |
| Cow position: | chr4:15194718-15195203 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 118, 21 |
| Conread position: | 316-622 |
| Cow position: | chr4:27295397-27295091 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 116, 40 |
| Conread position: | 317-499 |
| Cow position: | chr4:21256462-21256639 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 87 |
| Conread position: | 317-568 |
| Cow position: | chr4:9354668-9354424 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-644 |
| Cow position: | chr4:26886747-26886417 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 77 |
| Conread position: | 317-650 |
| Cow position: | chr4:5880273-5880609 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-650 |
| Cow position: | chr4:13548137-13548472 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 34 |
| Conread position: | 317-652 |
| Cow position: | chr4:100826-100488 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 86 |
| Conread position: | 317-652 |
| Cow position: | chr4:1930516-1930183 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 12 |
| Conread position: | 317-652 |
| Cow position: | chr4:3125903-3126237 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr4:4416189-4416519 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 50 |
| Conread position: | 317-652 |
| Cow position: | chr4:18424417-18424080 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-652 |
| Cow position: | chr4:32212275-32212613 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 77 |
| Conread position: | 317-652 |
| Cow position: | chr4:41954581-41954916 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 85 |
| Conread position: | 317-652 |
| Cow position: | chr4:41958236-41958571 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 317-721 |
| Cow position: | chr4:6268523-6268125 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 317-810 |
| Cow position: | chr4:16326667-16326179 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 85 |
| Conread position: | 318-644 |
| Cow position: | chr4:13493427-13493756 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 24 |
| Conread position: | 318-652 |
| Cow position: | chr4:18190514-18190840 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 84 |
| Conread position: | 321-582 |
| Cow position: | chr4:43454788-43455038 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 214, 84 |
| Conread position: | 321-650 |
| Cow position: | chr4:16056712-16057043 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 321-816 |
| Cow position: | chr4:61694397-61693938 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 334 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 111, 40 |
| Conread position: | 330-644 |
| Cow position: | chr4:29531753-29531442 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 102, 72 |
| Conread position: | 334-584 |
| Cow position: | chr4:17587535-17587295 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 54 |
| Conread position: | 335-581 |
| Cow position: | chr4:41120448-41120691 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 336-644 |
| Cow position: | chr4:62568560-62568871 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 91, 66 |
| Conread position: | 336-645 |
| Cow position: | chr4:13870158-13870455 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 219, 52 |
| Conread position: | 350-652 |
| Cow position: | chr4:529539-529845 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 52 |
| Conread position: | 350-810 |
| Cow position: | chr4:159296-159753 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 53 |
| Conread position: | 356-647 |
| Cow position: | chr4:44925360-44925082 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 232, 33 |
| Conread position: | 360-567 |
| Cow position: | chr4:47254858-47254656 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 71, 42 |
| Conread position: | 364-650 |
| Cow position: | chr4:603168-603458 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 365-645 |
| Cow position: | chr4:41332866-41333151 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 197, 65 |
| Conread position: | 410-652 |
| Cow position: | chr4:27333903-27334157 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 454-644 |
| Cow position: | chr4:58689847-58689655 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 455-577 |
| Cow position: | chr4:64854021-64853897 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 479-732 |
| Cow position: | chr4:12587601-12587879 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 85, 268 |
| Conread position: | 484-652 |
| Cow position: | chr4:17093596-17093420 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 492-652 |
| Cow position: | chr4:27301189-27301023 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 501-816 |
| Cow position: | chr4:10881835-10882148 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 159 |
Show alignments to all cow chromosomes.