Cow genome map

Conread name: Ss1.1-Spl1-SPL01C070055.5

Conread position: 1-297
Cow position: chr7:51014363-51014658 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 204
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 88, 24

Conread position: 2-297
Cow position: chr7:67426440-67426728 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 201
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 28, 132

Conread position: 31-297
Cow position: chr7:4415491-4415763 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 55, 104

Conread position: 31-582
Cow position: chr7:29370145-29369597 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 103

Conread position: 53-297
Cow position: chr7:39107780-39107531 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 172
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 76

Conread position: 134-566
Cow position: chr7:68085401-68085839 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 290
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 37

Conread position: 136-743
Cow position: chr7:21310732-21311322 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 415
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 45, 71

Conread position: 295-645
Cow position: chr7:60460037-60459676 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 259
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 90, 41

Conread position: 310-650
Cow position: chr7:20799019-20798673 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 92

Conread position: 311-644
Cow position: chr7:34486349-34486679 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 80

Conread position: 313-626
Cow position: chr7:68480990-68481299 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 89

Conread position: 313-643
Cow position: chr7:32728071-32727752 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 225
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 265, 79

Conread position: 313-645
Cow position: chr7:68908751-68909083 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 32, 88

Conread position: 313-652
Cow position: chr7:24808021-24807683 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 78

Conread position: 313-816
Cow position: chr7:525407-525904 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 90

Conread position: 314-644
Cow position: chr7:39555025-39554696 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 116, 22

Conread position: 315-502
Cow position: chr7:5183844-5184022 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 117, 69

Conread position: 315-515
Cow position: chr7:4415814-4416005 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 154
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 57, 0

Conread position: 315-567
Cow position: chr7:13537145-13536906 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 123, 26

Conread position: 315-567
Cow position: chr7:34149537-34149783 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-585
Cow position: chr7:21985840-21986107 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 87

Conread position: 315-608
Cow position: chr7:68232376-68232658 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 271, 49

Conread position: 315-620
Cow position: chr7:446195-445889 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-638
Cow position: chr7:1450808-1451116 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 88

Conread position: 315-644
Cow position: chr7:8144806-8144474 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 315-644
Cow position: chr7:21127226-21126898 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 87

Conread position: 315-644
Cow position: chr7:46901642-46901308 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 35

Conread position: 315-645
Cow position: chr7:6489625-6489958 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 35

Conread position: 315-645
Cow position: chr7:21929579-21929915 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 75

Conread position: 315-645
Cow position: chr7:39792193-39792538 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 90

Conread position: 315-645
Cow position: chr7:58377327-58377008 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 235
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 26, 42

Conread position: 315-652
Cow position: chr7:1372209-1371873 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr7:14139162-14138822 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 315-652
Cow position: chr7:21234573-21234241 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr7:38397249-38397587 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 87

Conread position: 315-652
Cow position: chr7:45948713-45948377 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 60

Conread position: 315-652
Cow position: chr7:55537483-55537147 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 35

Conread position: 315-652
Cow position: chr7:59679285-59679622 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 84

Conread position: 315-652
Cow position: chr7:67799289-67799607 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 233
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 116, 76

Conread position: 315-815
Cow position: chr7:63386172-63386654 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 65

Conread position: 315-816
Cow position: chr7:33405803-33405312 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-816
Cow position: chr7:51014707-51015193 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 87

Conread position: 316-577
Cow position: chr7:33351677-33351929 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 181
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 116, 20

Conread position: 317-467
Cow position: chr7:19924386-19924239 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 87

Conread position: 317-478
Cow position: chr7:38536838-38536994 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 114, 74

Conread position: 317-503
Cow position: chr7:53991640-53991822 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 147
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 109, 17

Conread position: 317-560
Cow position: chr7:3234249-3234016 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 187
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 115, 83

Conread position: 317-585
Cow position: chr7:64241352-64241088 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 85

Conread position: 317-586
Cow position: chr7:11466336-11466081 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 115, 84

Conread position: 317-609
Cow position: chr7:60463583-60463878 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-645
Cow position: chr7:11446991-11447322 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-645
Cow position: chr7:25439944-25440275 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 74

Conread position: 317-645
Cow position: chr7:68333424-68333748 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 237
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 24, 88

Conread position: 317-650
Cow position: chr7:16438-16103 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 69

Conread position: 317-650
Cow position: chr7:61559647-61559983 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 85

Conread position: 317-652
Cow position: chr7:994957-995288 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 78

Conread position: 317-652
Cow position: chr7:6648222-6647885 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 85

Conread position: 317-810
Cow position: chr7:3300722-3300234 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-810
Cow position: chr7:27787071-27787557 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 85

Conread position: 317-810
Cow position: chr7:61808666-61809154 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 85

Conread position: 317-816
Cow position: chr7:10430984-10430495 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 85

Conread position: 318-644
Cow position: chr7:33072845-33072528 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 108, 84

Conread position: 318-650
Cow position: chr7:60794867-60794531 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 84

Conread position: 318-816
Cow position: chr7:24057876-24058369 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 337
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 114, 18

Conread position: 319-585
Cow position: chr7:5662811-5663064 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 113, 72

Conread position: 319-650
Cow position: chr7:65811273-65811603 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 83

Conread position: 319-652
Cow position: chr7:20515336-20515004 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 83

Conread position: 321-642
Cow position: chr7:58994035-58994353 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 42

Conread position: 321-650
Cow position: chr7:21320594-21320926 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 81

Conread position: 322-528
Cow position: chr7:1404162-1403963 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 110, 14

Conread position: 322-635
Cow position: chr7:3155683-3156003 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 74

Conread position: 322-643
Cow position: chr7:7294222-7293898 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 223
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 244, 37

Conread position: 323-505
Cow position: chr7:1610619-1610449 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 79, 0

Conread position: 323-661
Cow position: chr7:23837011-23837354 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 75

Conread position: 323-732
Cow position: chr7:48634879-48635303 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 66

Conread position: 326-800
Cow position: chr7:7257628-7258086 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 77

Conread position: 329-645
Cow position: chr7:21853377-21853066 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 222
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 78

Conread position: 332-652
Cow position: chr7:54644029-54643719 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 230
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 68

Conread position: 336-585
Cow position: chr7:67428392-67428639 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 53

Conread position: 336-645
Cow position: chr7:20305028-20304724 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 225
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 220, 21

Conread position: 336-816
Cow position: chr7:29470916-29471388 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 22

Conread position: 337-650
Cow position: chr7:25250560-25250877 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 229
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 94, 65

Conread position: 351-732
Cow position: chr7:67675585-67675971 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 17

Conread position: 356-586
Cow position: chr7:33758552-33758775 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 76, 46

Conread position: 359-644
Cow position: chr7:59029184-59029462 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 195, 44

Conread position: 372-652
Cow position: chr7:545329-545615 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 182
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 60, 90

Conread position: 394-645
Cow position: chr7:28620052-28620312 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 38, 11

Conread position: 396-650
Cow position: chr7:27101787-27101524 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 85

Conread position: 396-650
Cow position: chr7:33312405-33312143 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 200
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 85

Conread position: 398-644
Cow position: chr7:27584209-27583954 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 184
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 14, 85

Conread position: 416-614
Cow position: chr7:15810949-15810743 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 77, 64

Conread position: 441-626
Cow position: chr7:19270382-19270199 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 147, 11

Conread position: 451-645
Cow position: chr7:63555525-63555723 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 29

Conread position: 459-583
Cow position: chr7:6642035-6642161 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 103, 21

Conread position: 474-652
Cow position: chr7:61578040-61578227 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 89, 0

Conread position: 484-650
Cow position: chr7:20774727-20774556 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 104, 8

Conread position: 519-652
Cow position: chr7:59683819-59683956 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 69, 125

Show alignments to all cow chromosomes.