Cow genome map

Conread name: Ss1.1-Spl1-SPL01C070055.5

Conread position: 31-295
Cow position: chr9:34721432-34721700 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 42, 35

Conread position: 41-297
Cow position: chr9:2001039-2000774 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 181
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 96

Conread position: 47-297
Cow position: chr9:28688069-28688328 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 43, 84

Conread position: 90-292
Cow position: chr9:43663586-43663780 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 95-352
Cow position: chr9:13476859-13476604 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 177
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 80, 34

Conread position: 177-644
Cow position: chr9:47544862-47545341 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 316
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 50

Conread position: 241-645
Cow position: chr9:9705734-9706154 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 284
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 60, 130

Conread position: 242-652
Cow position: chr9:32969141-32969562 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 24

Conread position: 289-816
Cow position: chr9:53702476-53701963 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 360
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 8, 15

Conread position: 311-650
Cow position: chr9:780537-780196 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 78

Conread position: 311-652
Cow position: chr9:1636220-1636558 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 241
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 276, 90

Conread position: 313-614
Cow position: chr9:28688378-28688677 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 236
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 25, 7

Conread position: 313-652
Cow position: chr9:3005975-3005636 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 89

Conread position: 315-489
Cow position: chr9:25023026-25022858 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 116, 76

Conread position: 315-519
Cow position: chr9:6050771-6050575 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 117, 41

Conread position: 315-567
Cow position: chr9:42556198-42556446 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 20, 89

Conread position: 315-568
Cow position: chr9:59511661-59511907 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 40, 27

Conread position: 315-606
Cow position: chr9:6830234-6829937 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 81

Conread position: 315-613
Cow position: chr9:31807842-31808143 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 76

Conread position: 315-619
Cow position: chr9:59454989-59454687 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 75

Conread position: 315-630
Cow position: chr9:4650838-4650522 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 216
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 115, 21

Conread position: 315-642
Cow position: chr9:29628472-29628145 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 51

Conread position: 315-644
Cow position: chr9:16176045-16176375 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 83

Conread position: 315-644
Cow position: chr9:22653844-22654176 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 315-644
Cow position: chr9:37970933-37970592 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 315-644
Cow position: chr9:60277745-60277412 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 87

Conread position: 315-645
Cow position: chr9:4532769-4533101 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 76

Conread position: 315-645
Cow position: chr9:9646446-9646763 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 226
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 118, 21

Conread position: 315-645
Cow position: chr9:30672644-30672970 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 78

Conread position: 315-645
Cow position: chr9:34722185-34722509 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 44

Conread position: 315-645
Cow position: chr9:37162537-37162209 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 78

Conread position: 315-645
Cow position: chr9:51181912-51181581 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 56

Conread position: 315-652
Cow position: chr9:3543116-3543456 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 77

Conread position: 315-652
Cow position: chr9:7003060-7003420 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr9:7061817-7061470 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr9:9013376-9013712 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 35

Conread position: 315-652
Cow position: chr9:10322077-10322414 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 86

Conread position: 315-652
Cow position: chr9:18509525-18509187 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 88

Conread position: 315-652
Cow position: chr9:27034957-27035294 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 76

Conread position: 315-652
Cow position: chr9:42309959-42310297 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 79

Conread position: 315-652
Cow position: chr9:42569178-42569516 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 73

Conread position: 315-652
Cow position: chr9:47002467-47002807 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 87

Conread position: 315-652
Cow position: chr9:59173882-59173534 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 86

Conread position: 315-730
Cow position: chr9:3803615-3804056 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 87

Conread position: 315-732
Cow position: chr9:2171335-2171759 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 51

Conread position: 315-732
Cow position: chr9:3566564-3566134 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 87

Conread position: 315-732
Cow position: chr9:29027926-29027496 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 26

Conread position: 315-816
Cow position: chr9:28022075-28022571 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 26

Conread position: 315-816
Cow position: chr9:59536373-59536863 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 25

Conread position: 316-645
Cow position: chr9:5514698-5515027 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 25

Conread position: 316-732
Cow position: chr9:59444124-59444555 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 303
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 73

Conread position: 317-472
Cow position: chr9:16268645-16268795 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 115, 85

Conread position: 317-476
Cow position: chr9:25754950-25754797 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 114, 61

Conread position: 317-523
Cow position: chr9:49177554-49177354 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 115, 67

Conread position: 317-567
Cow position: chr9:3393336-3393095 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 25, 67

Conread position: 317-586
Cow position: chr9:1075924-1075663 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 64

Conread position: 317-586
Cow position: chr9:31064706-31064972 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-586
Cow position: chr9:44795551-44795803 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 203
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 114, 85

Conread position: 317-618
Cow position: chr9:2487857-2487548 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 85, 40

Conread position: 317-640
Cow position: chr9:25035572-25035246 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 77

Conread position: 317-644
Cow position: chr9:59426048-59426372 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 76

Conread position: 317-645
Cow position: chr9:29328929-29329262 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 34, 72

Conread position: 317-645
Cow position: chr9:36724775-36725106 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 85

Conread position: 317-647
Cow position: chr9:20308868-20308546 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 24

Conread position: 317-650
Cow position: chr9:1251721-1251388 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 67

Conread position: 317-650
Cow position: chr9:51210955-51211291 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-650
Cow position: chr9:64018188-64017853 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 85

Conread position: 317-652
Cow position: chr9:130915-130576 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-652
Cow position: chr9:222255-221917 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-652
Cow position: chr9:17064114-17063778 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-652
Cow position: chr9:27934361-27934699 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 83

Conread position: 317-652
Cow position: chr9:28678246-28678581 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 317-652
Cow position: chr9:45873620-45873954 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 8

Conread position: 317-807
Cow position: chr9:30826954-30827435 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 58

Conread position: 317-810
Cow position: chr9:28440082-28440569 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 85

Conread position: 317-810
Cow position: chr9:50790987-50791473 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 85

Conread position: 319-652
Cow position: chr9:44818458-44818784 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 83

Conread position: 321-586
Cow position: chr9:13476603-13476341 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 81

Conread position: 321-615
Cow position: chr9:1980268-1980564 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 68

Conread position: 323-644
Cow position: chr9:2053047-2053359 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 232
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 109, 71

Conread position: 323-645
Cow position: chr9:4282057-4282376 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 215
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 93, 61

Conread position: 325-816
Cow position: chr9:43664099-43664569 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 20

Conread position: 326-652
Cow position: chr9:64119509-64119829 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 18

Conread position: 329-643
Cow position: chr9:14762158-14761853 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 16

Conread position: 331-651
Cow position: chr9:25187391-25187718 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 73

Conread position: 338-587
Cow position: chr9:37095823-37096059 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 95, 12

Conread position: 338-644
Cow position: chr9:30487868-30488176 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 94, 59

Conread position: 338-652
Cow position: chr9:5004279-5004586 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 94, 56

Conread position: 339-652
Cow position: chr9:3763307-3763616 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 93, 61

Conread position: 342-643
Cow position: chr9:28695761-28696063 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 52

Conread position: 350-652
Cow position: chr9:6249606-6249911 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 44

Conread position: 352-645
Cow position: chr9:3167259-3167548 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 113, 49

Conread position: 353-643
Cow position: chr9:3998321-3998615 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 79, 49

Conread position: 356-652
Cow position: chr9:4943500-4943200 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 46

Conread position: 359-586
Cow position: chr9:7091307-7091535 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 76

Conread position: 383-737
Cow position: chr9:915215-915571 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 236
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 48, 78

Conread position: 401-635
Cow position: chr9:28653928-28654172 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 170
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 72, 30

Conread position: 411-816
Cow position: chr9:59482438-59482026 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 278
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 27, 60

Conread position: 423-652
Cow position: chr9:2209672-2209902 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 67, 57

Conread position: 433-785
Cow position: chr9:40223673-40224033 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 171
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 129, 47

Conread position: 464-620
Cow position: chr9:10936994-10937158 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 100, 16

Conread position: 479-645
Cow position: chr9:27782649-27782814 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 83, 64

Conread position: 483-608
Cow position: chr9:25022736-25022602 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 82, 0

Show alignments to all cow chromosomes.