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Cow genome map

           
Conread name:
           
Ss1.1-Spl1-SPL01C070055.5
        

               
Conread position:
               
1-638
               

               
Cow position:
               
chrX:13417577-13416923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
107-296
               

               
Cow position:
               
chrX:31726059-31726248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 22
               

               
Conread position:
               
108-645
               

               
Cow position:
               
chrX:30069712-30070249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
133-504
               

               
Cow position:
               
chrX:2143705-2144074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
134-611
               

               
Cow position:
               
chrX:18534463-18534944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 115
               

               
Conread position:
               
246-465
               

               
Cow position:
               
chrX:22814490-22814718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
261-806
               

               
Cow position:
               
chrX:16275768-16276311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
262-644
               

               
Cow position:
               
chrX:20797095-20797482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
24, 86
               

               
Conread position:
               
307-546
               

               
Cow position:
               
chrX:30366997-30366772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
311-553
               

               
Cow position:
               
chrX:30178815-30178578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
24, 42
               

               
Conread position:
               
311-621
               

               
Cow position:
               
chrX:2536274-2535963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 104
               

               
Conread position:
               
311-643
               

               
Cow position:
               
chrX:23418825-23418492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
121, 77
               

               
Conread position:
               
313-467
               

               
Cow position:
               
chrX:5299042-5298893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
119, 90
               

               
Conread position:
               
313-567
               

               
Cow position:
               
chrX:3407639-3407394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
24, 88
               

               
Conread position:
               
313-652
               

               
Cow position:
               
chrX:29096383-29096722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 81
               

               
Conread position:
               
313-747
               

               
Cow position:
               
chrX:29950409-29949970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
313-810
               

               
Cow position:
               
chrX:5336311-5335819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 69
               

               
Conread position:
               
313-816
               

               
Cow position:
               
chrX:23019505-23020002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 89
               

               
Conread position:
               
314-661
               

               
Cow position:
               
chrX:2187483-2187827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 71
               

               
Conread position:
               
315-570
               

               
Cow position:
               
chrX:28871000-28870753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
32, 39
               

               
Conread position:
               
315-584
               

               
Cow position:
               
chrX:7407305-7407039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
112, 75
               

               
Conread position:
               
315-585
               

               
Cow position:
               
chrX:23391415-23391149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 76
               

               
Conread position:
               
315-644
               

               
Cow position:
               
chrX:2482453-2482121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 80
               

               
Conread position:
               
315-644
               

               
Cow position:
               
chrX:12459003-12459343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 44
               

               
Conread position:
               
315-644
               

               
Cow position:
               
chrX:21223106-21223435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
315-644
               

               
Cow position:
               
chrX:30711767-30712098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
315-645
               

               
Cow position:
               
chrX:13053204-13053516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 57
               

               
Conread position:
               
315-645
               

               
Cow position:
               
chrX:17667715-17667372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 87
               

               
Conread position:
               
315-645
               

               
Cow position:
               
chrX:20720167-20720500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 76
               

               
Conread position:
               
315-646
               

               
Cow position:
               
chrX:22582551-22582227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:320647-320987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:970952-971292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:4796487-4796835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
138, 30
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:13412955-13412615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 79
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:15127058-15126719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 6
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:21579653-21579985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 56
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:21829708-21830048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 79
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:26758423-26758094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:27495101-27495435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 78
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:29793940-29793605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 88
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:29885170-29885509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 87
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:31198624-31198967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 88
               

               
Conread position:
               
315-652
               

               
Cow position:
               
chrX:41851016-41850678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 86
               

               
Conread position:
               
315-732
               

               
Cow position:
               
chrX:30183712-30183300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 78
               

               
Conread position:
               
315-811
               

               
Cow position:
               
chrX:1547158-1547644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 76
               

               
Conread position:
               
315-811
               

               
Cow position:
               
chrX:26528159-26528646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 36
               

               
Conread position:
               
315-816
               

               
Cow position:
               
chrX:22513543-22513049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
163, 131
               

               
Conread position:
               
315-816
               

               
Cow position:
               
chrX:23040943-23040449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 79
               

               
Conread position:
               
315-816
               

               
Cow position:
               
chrX:23277203-23277699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 76
               

               
Conread position:
               
315-816
               

               
Cow position:
               
chrX:28553826-28554283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
117, 6
               

               
Conread position:
               
316-645
               

               
Cow position:
               
chrX:10417111-10416781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
316-650
               

               
Cow position:
               
chrX:40734567-40734244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
317-467
               

               
Cow position:
               
chrX:8454931-8455077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 76
               

               
Conread position:
               
317-490
               

               
Cow position:
               
chrX:30056839-30057006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 84
               

               
Conread position:
               
317-525
               

               
Cow position:
               
chrX:12803685-12803486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-565
               

               
Cow position:
               
chrX:16237962-16238204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 86
               

               
Conread position:
               
317-567
               

               
Cow position:
               
chrX:28758462-28758210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-584
               

               
Cow position:
               
chrX:1942564-1942305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
115, 76
               

               
Conread position:
               
317-585
               

               
Cow position:
               
chrX:23214175-23213909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
317-586
               

               
Cow position:
               
chrX:14594950-14595216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-586
               

               
Cow position:
               
chrX:16812416-16812150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 72
               

               
Conread position:
               
317-586
               

               
Cow position:
               
chrX:18219576-18219843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-586
               

               
Cow position:
               
chrX:28562035-28561770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 62
               

               
Conread position:
               
317-609
               

               
Cow position:
               
chrX:13397941-13397655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 72
               

               
Conread position:
               
317-610
               

               
Cow position:
               
chrX:5394821-5394526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 72
               

               
Conread position:
               
317-614
               

               
Cow position:
               
chrX:15980771-15980480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 67
               

               
Conread position:
               
317-615
               

               
Cow position:
               
chrX:30055556-30055255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
317-621
               

               
Cow position:
               
chrX:21304347-21304039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
317-625
               

               
Cow position:
               
chrX:40246695-40246389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 74
               

               
Conread position:
               
317-626
               

               
Cow position:
               
chrX:27426141-27425829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-626
               

               
Cow position:
               
chrX:30011218-30011530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-627
               

               
Cow position:
               
chrX:2102038-2102346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 58
               

               
Conread position:
               
317-636
               

               
Cow position:
               
chrX:44387307-44387621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
317-644
               

               
Cow position:
               
chrX:6250246-6249927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
264, 19
               

               
Conread position:
               
317-644
               

               
Cow position:
               
chrX:29779310-29778988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
317-645
               

               
Cow position:
               
chrX:7752079-7752409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:507152-506816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:2604227-2604562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 72
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:3375933-3375597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:3421006-3420691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 33
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:5863577-5863909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 84
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:7481811-7482147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:11464823-11464487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 71
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:12280091-12279757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:12288215-12287888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:12353419-12353755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:12654581-12654247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 61
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:14786704-14786374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:22611126-22611458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 85
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:28585159-28585494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:30173492-30173156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chrX:39563752-39563419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 73
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:1833997-1834335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:5323544-5323206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 85
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:6282566-6282236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 85
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:8479829-8480167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:10531379-10531041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:16362945-16362607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 85
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:16699486-16699824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 77
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:20696917-20696586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 41
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:21058977-21059298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
248, 45
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:21340583-21340917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 86
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:22619129-22618782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:24089580-24089911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 83
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:26399998-26399664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 75
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:28634237-28633910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:31187067-31186707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 180
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:32066977-32066648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 22
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:35530041-35530379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-652
               

               
Cow position:
               
chrX:37812340-37812679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-721
               

               
Cow position:
               
chrX:8588357-8588773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-721
               

               
Cow position:
               
chrX:12343135-12343551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 52
               

               
Conread position:
               
317-800
               

               
Cow position:
               
chrX:31493599-31494075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 85
               

               
Conread position:
               
317-810
               

               
Cow position:
               
chrX:6872894-6872406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-810
               

               
Cow position:
               
chrX:9008517-9009002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-810
               

               
Cow position:
               
chrX:18659603-18659121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-810
               

               
Cow position:
               
chrX:20315883-20315395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-810
               

               
Cow position:
               
chrX:22525425-22524937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-810
               

               
Cow position:
               
chrX:29911246-29910758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-815
               

               
Cow position:
               
chrX:21490376-21490856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 71
               

               
Conread position:
               
317-816
               

               
Cow position:
               
chrX:21589153-21589640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 85
               

               
Conread position:
               
317-816
               

               
Cow position:
               
chrX:26767013-26766537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 72
               

               
Conread position:
               
318-476
               

               
Cow position:
               
chrX:5833251-5833098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
113, 84
               

               
Conread position:
               
318-518
               

               
Cow position:
               
chrX:22130057-22129864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
318-625
               

               
Cow position:
               
chrX:34838121-34837823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
149, 81
               

               
Conread position:
               
318-644
               

               
Cow position:
               
chrX:29853382-29853056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 84
               

               
Conread position:
               
318-652
               

               
Cow position:
               
chrX:2562677-2562341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 84
               

               
Conread position:
               
318-652
               

               
Cow position:
               
chrX:34553310-34553639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 53
               

               
Conread position:
               
319-602
               

               
Cow position:
               
chrX:7030367-7030648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 23
               

               
Conread position:
               
319-645
               

               
Cow position:
               
chrX:7093779-7094108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 83
               

               
Conread position:
               
319-650
               

               
Cow position:
               
chrX:13076517-13076183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 75
               

               
Conread position:
               
319-650
               

               
Cow position:
               
chrX:13097091-13096757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 75
               

               
Conread position:
               
319-652
               

               
Cow position:
               
chrX:12478909-12479224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
176, 31
               

               
Conread position:
               
319-708
               

               
Cow position:
               
chrX:37849195-37849595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 83
               

               
Conread position:
               
319-745
               

               
Cow position:
               
chrX:29285626-29286060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 81
               

               
Conread position:
               
319-800
               

               
Cow position:
               
chrX:20359870-20359394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 81
               

               
Conread position:
               
321-616
               

               
Cow position:
               
chrX:19874018-19874298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 52
               

               
Conread position:
               
321-642
               

               
Cow position:
               
chrX:21269852-21269549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
321-644
               

               
Cow position:
               
chrX:24196202-24195873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 85
               

               
Conread position:
               
321-645
               

               
Cow position:
               
chrX:1689605-1689281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
236, 75
               

               
Conread position:
               
321-645
               

               
Cow position:
               
chrX:24478891-24478579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
110, 67
               

               
Conread position:
               
325-626
               

               
Cow position:
               
chrX:26427452-26427154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
106, 68
               

               
Conread position:
               
326-537
               

               
Cow position:
               
chrX:24484223-24484017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
90, 77
               

               
Conread position:
               
329-645
               

               
Cow position:
               
chrX:28651352-28651038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 73
               

               
Conread position:
               
330-587
               

               
Cow position:
               
chrX:26998277-26998524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
229, 63
               

               
Conread position:
               
331-652
               

               
Cow position:
               
chrX:27987631-27987308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 69
               

               
Conread position:
               
332-591
               

               
Cow position:
               
chrX:6242459-6242197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
336-645
               

               
Cow position:
               
chrX:30231897-30231588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 58
               

               
Conread position:
               
336-650
               

               
Cow position:
               
chrX:9125562-9125875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 66
               

               
Conread position:
               
336-650
               

               
Cow position:
               
chrX:15179227-15178910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 53
               

               
Conread position:
               
336-659
               

               
Cow position:
               
chrX:31082178-31082483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
229, 71
               

               
Conread position:
               
336-810
               

               
Cow position:
               
chrX:982860-983329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 66
               

               
Conread position:
               
342-645
               

               
Cow position:
               
chrX:4410878-4411188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
350-614
               

               
Cow position:
               
chrX:41411396-41411663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
88, 52
               

               
Conread position:
               
351-816
               

               
Cow position:
               
chrX:16016210-16015765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 51
               

               
Conread position:
               
352-645
               

               
Cow position:
               
chrX:24377255-24377546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
356-645
               

               
Cow position:
               
chrX:34345456-34345748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
356-650
               

               
Cow position:
               
chrX:27624214-27624511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 46
               

               
Conread position:
               
359-616
               

               
Cow position:
               
chrX:12182948-12183206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
80, 46
               

               
Conread position:
               
363-816
               

               
Cow position:
               
chrX:27960780-27961228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
364-652
               

               
Cow position:
               
chrX:15599197-15599482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
366-645
               

               
Cow position:
               
chrX:6884833-6884555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
203, 36
               

               
Conread position:
               
396-549
               

               
Cow position:
               
chrX:18953516-18953363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
396-642
               

               
Cow position:
               
chrX:5652088-5651833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
396-645
               

               
Cow position:
               
chrX:24325323-24325071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
396-652
               

               
Cow position:
               
chrX:3084868-3084608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 85
               

               
Conread position:
               
396-800
               

               
Cow position:
               
chrX:5283525-5283120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
396-816
               

               
Cow position:
               
chrX:28627385-28626962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
30, 61
               

               
Conread position:
               
399-645
               

               
Cow position:
               
chrX:41888731-41888471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
409-645
               

               
Cow position:
               
chrX:24134990-24134746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
57, 73
               

               
Conread position:
               
409-650
               

               
Cow position:
               
chrX:17478160-17477910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
23, 72
               

               
Conread position:
               
410-650
               

               
Cow position:
               
chrX:29173495-29173248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 71
               

               
Conread position:
               
410-711
               

               
Cow position:
               
chrX:31374596-31374894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
111, 21
               

               
Conread position:
               
431-807
               

               
Cow position:
               
chrX:11149045-11148671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 49
               

               
Conread position:
               
436-652
               

               
Cow position:
               
chrX:22488443-22488664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
441-636
               

               
Cow position:
               
chrX:38038555-38038750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 35
               

               
Conread position:
               
464-650
               

               
Cow position:
               
chrX:11422195-11422386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
124, 16
               

               
Conread position:
               
465-652
               

               
Cow position:
               
chrX:18953359-18953164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
99, 15
               

               
Conread position:
               
471-650
               

               
Cow position:
               
chrX:12703376-12703189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
471-652
               

               
Cow position:
               
chrX:12669412-12669232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
472-810
               

               
Cow position:
               
chrX:28758167-28757828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
92, 189
               

               
Conread position:
               
481-652
               

               
Cow position:
               
chrX:22816188-22816366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
87, 20
               

               
Conread position:
               
488-645
               

               
Cow position:
               
chrX:30057478-30057642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
504-645
               

               
Cow position:
               
chrX:8963213-8963066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               
Show alignments to all cow chromosomes.