Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 407-981 |
| Cow position: | chr13:39984250-39984827 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 414-973 |
| Cow position: | chr13:39984341-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 339 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 478-983 |
| Cow position: | chr13:39984069-39984577 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 311 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 46, 190 |
| Conread position: | 533-983 |
| Cow position: | chr13:24162798-24163248 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 534-938 |
| Cow position: | chr13:22125493-22125897 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 534-938 |
| Cow position: | chr13:24163219-24163623 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 363, 354 |
| Conread position: | 535-900 |
| Cow position: | chr13:56333693-56334058 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 244, 234 |
| Conread position: | 536-858 |
| Cow position: | chr13:56292136-56291813 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 536-981 |
| Cow position: | chr13:56292293-56291859 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 553-983 |
| Cow position: | chr13:39984063-39984493 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 106, 112 |
| Conread position: | 555-762 |
| Cow position: | chr13:56334058-56334265 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-932 |
| Cow position: | chr13:39984234-39984610 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-964 |
| Cow position: | chr13:22125348-22125755 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 399, 393 |
| Conread position: | 557-964 |
| Cow position: | chr13:24163074-24163481 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 399, 393 |
| Conread position: | 557-983 |
| Cow position: | chr13:22124760-22125186 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 52 |
| Conread position: | 557-983 |
| Cow position: | chr13:22124844-22125270 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 557-983 |
| Cow position: | chr13:22124928-22125354 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 557-983 |
| Cow position: | chr13:22125096-22125522 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 7, 13 |
| Conread position: | 557-983 |
| Cow position: | chr13:22125180-22125606 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 557-983 |
| Cow position: | chr13:22125264-22125690 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 557-983 |
| Cow position: | chr13:24162486-24162912 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 50 |
| Conread position: | 557-983 |
| Cow position: | chr13:24162570-24162996 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 557-983 |
| Cow position: | chr13:24162654-24163080 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 57 |
| Conread position: | 557-983 |
| Cow position: | chr13:24162906-24163332 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 557-983 |
| Cow position: | chr13:24162990-24163416 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 557-983 |
| Cow position: | chr13:39930647-39931073 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 557-983 |
| Cow position: | chr13:39930731-39931155 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 559-948 |
| Cow position: | chr13:56292194-56291807 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 560-979 |
| Cow position: | chr13:24163161-24163579 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 48 |
| Conread position: | 570-983 |
| Cow position: | chr13:39930576-39930989 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 39 |
| Conread position: | 605-983 |
| Cow position: | chr13:56333679-56334057 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 606-984 |
| Cow position: | chr13:56333512-56333890 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 158, 178 |
| Conread position: | 662-983 |
| Cow position: | chr13:22124697-22125018 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 662-983 |
| Cow position: | chr13:24162423-24162744 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 736-983 |
| Cow position: | chr13:39930574-39930821 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 214, 221 |
| Conread position: | 740-983 |
| Cow position: | chr13:24162417-24162660 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 216, 210 |
Show alignments to all cow chromosomes.