Cow genome map
Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
Conread position: | 407-933 |
Cow position: | chr17:22473267-22473796 (view UCSC Genome Browser custom track) |
Alignm length: | 532 |
Alignm identity: | 324 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 59, 67 |
Conread position: | 407-983 |
Cow position: | chr17:22553003-22552424 (view UCSC Genome Browser custom track) |
Alignm length: | 583 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 153 |
Conread position: | 450-935 |
Cow position: | chr17:22499419-22498931 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 55 |
Conread position: | 475-981 |
Cow position: | chr17:22452379-22451871 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 16 |
Conread position: | 476-981 |
Cow position: | chr17:22499225-22498717 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 316 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 45, 81 |
Conread position: | 477-984 |
Cow position: | chr17:22499308-22498798 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 311 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 38, 85 |
Conread position: | 533-903 |
Cow position: | chr17:22551866-22551496 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 24 |
Conread position: | 533-903 |
Cow position: | chr17:22552286-22551916 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 25 |
Conread position: | 533-978 |
Cow position: | chr17:22452235-22451790 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 401, 419 |
Conread position: | 533-981 |
Cow position: | chr17:22552538-22552090 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 21 |
Conread position: | 534-903 |
Cow position: | chr17:22498912-22498543 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 234 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 13, 27 |
Conread position: | 534-983 |
Cow position: | chr17:22452402-22451953 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 33 |
Conread position: | 534-983 |
Cow position: | chr17:22499080-22498631 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 278 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 21, 14 |
Conread position: | 535-762 |
Cow position: | chr17:22589450-22589223 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 153 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 60, 77 |
Conread position: | 535-980 |
Cow position: | chr17:22552116-22551671 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 86 |
Conread position: | 535-980 |
Cow position: | chr17:22589954-22589509 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 283 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 12, 22 |
Conread position: | 535-981 |
Cow position: | chr17:22552032-22551586 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 22 |
Conread position: | 535-981 |
Cow position: | chr17:22552368-22551922 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 81 |
Conread position: | 535-981 |
Cow position: | chr17:22552620-22552174 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 307 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 32 |
Conread position: | 535-981 |
Cow position: | chr17:22552956-22552510 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 22 |
Conread position: | 536-903 |
Cow position: | chr17:22589869-22589502 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 251 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 12, 21 |
Conread position: | 536-923 |
Cow position: | chr17:22452064-22451677 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 253 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 81, 85 |
Conread position: | 536-975 |
Cow position: | chr17:22590121-22589682 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 536-981 |
Cow position: | chr17:22552451-22552006 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 21 |
Conread position: | 536-981 |
Cow position: | chr17:22552703-22552258 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 310 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 21 |
Conread position: | 553-981 |
Cow position: | chr17:22473500-22473929 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 261 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 424, 0 |
Conread position: | 556-929 |
Cow position: | chr17:22589765-22589392 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 240 |
Alignm E-value: | 9e-39 |
Alignm gaps (pig, cow): | 245, 235 |
Conread position: | 556-931 |
Cow position: | chr17:22589597-22589222 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 235 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 224, 210 |
Conread position: | 556-942 |
Cow position: | chr17:22452128-22451742 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 253 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 41, 34 |
Conread position: | 556-943 |
Cow position: | chr17:22551927-22551540 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 59 |
Conread position: | 556-981 |
Cow position: | chr17:22552179-22551754 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 65 |
Conread position: | 556-981 |
Cow position: | chr17:22552767-22552342 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 58 |
Conread position: | 556-981 |
Cow position: | chr17:22590017-22589592 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 556-981 |
Cow position: | chr17:22590185-22589760 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 557-903 |
Cow position: | chr17:41440533-41440187 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 226 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 62, 57 |
Conread position: | 557-969 |
Cow position: | chr17:41440785-41440373 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 557-981 |
Cow position: | chr17:22473336-22473760 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 270 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 64, 52 |
Conread position: | 557-981 |
Cow position: | chr17:22499393-22498969 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 267 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 557-981 |
Cow position: | chr17:22553102-22552678 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 52 |
Conread position: | 557-983 |
Cow position: | chr17:41440953-41440527 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 87 |
Conread position: | 557-983 |
Cow position: | chr17:41441037-41440611 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 160 |
Conread position: | 557-983 |
Cow position: | chr17:44467442-44467868 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 272 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 382, 376 |
Conread position: | 557-983 |
Cow position: | chr17:44467526-44467952 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 268 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 299, 292 |
Conread position: | 557-983 |
Cow position: | chr17:44467610-44468036 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 264 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 301, 294 |
Conread position: | 557-983 |
Cow position: | chr17:44467694-44468120 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 266 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 133, 124 |
Conread position: | 557-983 |
Cow position: | chr17:44467946-44468372 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 264 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 307, 298 |
Conread position: | 558-969 |
Cow position: | chr17:41440700-41440289 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 300, 296 |
Conread position: | 558-984 |
Cow position: | chr17:41440616-41440190 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 50 |
Conread position: | 560-959 |
Cow position: | chr17:41441118-41440719 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 305, 293 |
Conread position: | 560-981 |
Cow position: | chr17:22589677-22589256 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 261 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 216, 221 |
Conread position: | 561-943 |
Cow position: | chr17:22553013-22552632 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 571-983 |
Cow position: | chr17:44467372-44467784 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 280 |
Conread position: | 572-981 |
Cow position: | chr17:22590253-22589844 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 20 |
Conread position: | 578-983 |
Cow position: | chr17:41440848-41440443 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 30 |
Conread position: | 586-982 |
Cow position: | chr17:44467891-44468287 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 251 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 605-981 |
Cow position: | chr17:22590304-22589928 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 242 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 253, 245 |
Conread position: | 605-983 |
Cow position: | chr17:22553138-22552760 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 247 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 17, 9 |
Conread position: | 616-969 |
Cow position: | chr17:22499418-22499065 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 222 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 619-979 |
Cow position: | chr17:44467840-44468200 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 225 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 662-983 |
Cow position: | chr17:41441100-41440779 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 227, 234 |
Conread position: | 728-969 |
Cow position: | chr17:41441118-41440877 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 171 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 814-983 |
Cow position: | chr17:41441116-41440947 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 127 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 143, 136 |
Show alignments to all cow chromosomes.