Cow genome map

Conread name: Ss1.1-Spl1-SPL01E070044.5

Conread position: 407-933
Cow position: chr17:22473267-22473796 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 324
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 59, 67

Conread position: 407-983
Cow position: chr17:22553003-22552424 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 153

Conread position: 450-935
Cow position: chr17:22499419-22498931 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 55

Conread position: 475-981
Cow position: chr17:22452379-22451871 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 16

Conread position: 476-981
Cow position: chr17:22499225-22498717 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 316
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 45, 81

Conread position: 477-984
Cow position: chr17:22499308-22498798 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 311
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 38, 85

Conread position: 533-903
Cow position: chr17:22551866-22551496 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 24

Conread position: 533-903
Cow position: chr17:22552286-22551916 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 25

Conread position: 533-978
Cow position: chr17:22452235-22451790 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 419

Conread position: 533-981
Cow position: chr17:22552538-22552090 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 21

Conread position: 534-903
Cow position: chr17:22498912-22498543 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 234
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 27

Conread position: 534-983
Cow position: chr17:22452402-22451953 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 33

Conread position: 534-983
Cow position: chr17:22499080-22498631 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 278
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 21, 14

Conread position: 535-762
Cow position: chr17:22589450-22589223 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 77

Conread position: 535-980
Cow position: chr17:22552116-22551671 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 86

Conread position: 535-980
Cow position: chr17:22589954-22589509 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 283
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 22

Conread position: 535-981
Cow position: chr17:22552032-22551586 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 22

Conread position: 535-981
Cow position: chr17:22552368-22551922 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 81

Conread position: 535-981
Cow position: chr17:22552620-22552174 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 32

Conread position: 535-981
Cow position: chr17:22552956-22552510 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 22

Conread position: 536-903
Cow position: chr17:22589869-22589502 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 251
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 12, 21

Conread position: 536-923
Cow position: chr17:22452064-22451677 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 253
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 81, 85

Conread position: 536-975
Cow position: chr17:22590121-22589682 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 536-981
Cow position: chr17:22552451-22552006 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 21

Conread position: 536-981
Cow position: chr17:22552703-22552258 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 21

Conread position: 553-981
Cow position: chr17:22473500-22473929 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 261
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 424, 0

Conread position: 556-929
Cow position: chr17:22589765-22589392 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 240
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 245, 235

Conread position: 556-931
Cow position: chr17:22589597-22589222 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 235
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 224, 210

Conread position: 556-942
Cow position: chr17:22452128-22451742 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 253
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 41, 34

Conread position: 556-943
Cow position: chr17:22551927-22551540 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 59

Conread position: 556-981
Cow position: chr17:22552179-22551754 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 65

Conread position: 556-981
Cow position: chr17:22552767-22552342 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 58

Conread position: 556-981
Cow position: chr17:22590017-22589592 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 556-981
Cow position: chr17:22590185-22589760 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 557-903
Cow position: chr17:41440533-41440187 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 226
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 62, 57

Conread position: 557-969
Cow position: chr17:41440785-41440373 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 557-981
Cow position: chr17:22473336-22473760 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 270
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 64, 52

Conread position: 557-981
Cow position: chr17:22499393-22498969 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 267
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 557-981
Cow position: chr17:22553102-22552678 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 52

Conread position: 557-983
Cow position: chr17:41440953-41440527 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 87

Conread position: 557-983
Cow position: chr17:41441037-41440611 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 160

Conread position: 557-983
Cow position: chr17:44467442-44467868 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 272
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 382, 376

Conread position: 557-983
Cow position: chr17:44467526-44467952 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 268
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 299, 292

Conread position: 557-983
Cow position: chr17:44467610-44468036 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 264
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 301, 294

Conread position: 557-983
Cow position: chr17:44467694-44468120 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 266
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 133, 124

Conread position: 557-983
Cow position: chr17:44467946-44468372 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 264
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 307, 298

Conread position: 558-969
Cow position: chr17:41440700-41440289 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 296

Conread position: 558-984
Cow position: chr17:41440616-41440190 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 50

Conread position: 560-959
Cow position: chr17:41441118-41440719 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 293

Conread position: 560-981
Cow position: chr17:22589677-22589256 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 261
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 216, 221

Conread position: 561-943
Cow position: chr17:22553013-22552632 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 571-983
Cow position: chr17:44467372-44467784 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 280

Conread position: 572-981
Cow position: chr17:22590253-22589844 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 20

Conread position: 578-983
Cow position: chr17:41440848-41440443 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 30

Conread position: 586-982
Cow position: chr17:44467891-44468287 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 251
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 605-981
Cow position: chr17:22590304-22589928 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 242
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 253, 245

Conread position: 605-983
Cow position: chr17:22553138-22552760 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 247
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 17, 9

Conread position: 616-969
Cow position: chr17:22499418-22499065 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 222
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 619-979
Cow position: chr17:44467840-44468200 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 225
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 662-983
Cow position: chr17:41441100-41440779 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 234

Conread position: 728-969
Cow position: chr17:41441118-41440877 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 814-983
Cow position: chr17:41441116-41440947 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 143, 136

Show alignments to all cow chromosomes.