Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 398-981 |
| Cow position: | chr19:14960466-14959882 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 93 |
| Conread position: | 404-981 |
| Cow position: | chr19:23613951-23614531 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 355 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 111, 153 |
| Conread position: | 406-982 |
| Cow position: | chr19:23649319-23649898 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 407-729 |
| Cow position: | chr19:23614794-23615117 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 407-933 |
| Cow position: | chr19:14960289-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 407-981 |
| Cow position: | chr19:14940258-14940835 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 211 |
| Conread position: | 407-981 |
| Cow position: | chr19:14940342-14940919 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 64 |
| Conread position: | 407-981 |
| Cow position: | chr19:23613786-23614363 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 351 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 130, 98 |
| Conread position: | 416-981 |
| Cow position: | chr19:23614467-23615035 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 462-933 |
| Cow position: | chr19:20677684-20678162 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 160 |
| Conread position: | 466-981 |
| Cow position: | chr19:23597021-23597540 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 474-983 |
| Cow position: | chr19:23613434-23613945 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 476-980 |
| Cow position: | chr19:23649809-23650316 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 139 |
| Conread position: | 477-902 |
| Cow position: | chr19:23597285-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 376 |
| Conread position: | 477-981 |
| Cow position: | chr19:23649558-23650065 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 398 |
| Conread position: | 519-984 |
| Cow position: | chr19:14959273-14958818 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 17 |
| Conread position: | 532-902 |
| Cow position: | chr19:20635403-20635033 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 533-981 |
| Cow position: | chr19:23613747-23614195 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 320 |
| Conread position: | 535-969 |
| Cow position: | chr19:23597262-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 415 |
| Conread position: | 535-969 |
| Cow position: | chr19:43570075-43569645 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 535-980 |
| Cow position: | chr19:14960242-14959801 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 535-981 |
| Cow position: | chr19:23613413-23613859 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 418 |
| Conread position: | 535-981 |
| Cow position: | chr19:23613833-23614279 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 535-981 |
| Cow position: | chr19:23614337-23614783 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 535-981 |
| Cow position: | chr19:43570159-43569715 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 284 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 535-983 |
| Cow position: | chr19:23614505-23614953 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 536-807 |
| Cow position: | chr19:23650208-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 536-948 |
| Cow position: | chr19:23614674-23615086 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 267 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 536-963 |
| Cow position: | chr19:23650040-23650467 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 536-981 |
| Cow position: | chr19:14959419-14958989 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 536-981 |
| Cow position: | chr19:43570242-43569797 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 280 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 536-983 |
| Cow position: | chr19:14940222-14940669 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 415 |
| Conread position: | 536-983 |
| Cow position: | chr19:14940558-14941005 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 536-984 |
| Cow position: | chr19:20635483-20635035 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 155 |
| Conread position: | 538-961 |
| Cow position: | chr19:43570476-43570069 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 266 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 58, 10 |
| Conread position: | 547-981 |
| Cow position: | chr19:20677523-20677958 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 7, 53 |
| Conread position: | 551-932 |
| Cow position: | chr19:20677609-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 552-891 |
| Cow position: | chr19:23650140-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 303 |
| Conread position: | 553-795 |
| Cow position: | chr19:23614859-23615101 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 553-802 |
| Cow position: | chr19:14940827-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 553-807 |
| Cow position: | chr19:14915961-14916215 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 553-812 |
| Cow position: | chr19:14959570-14959311 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 68, 62 |
| Conread position: | 553-930 |
| Cow position: | chr19:20678286-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 307, 316 |
| Conread position: | 553-933 |
| Cow position: | chr19:20678202-20678582 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 227, 222 |
| Conread position: | 553-939 |
| Cow position: | chr19:14948384-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 298 |
| Conread position: | 553-981 |
| Cow position: | chr19:14940071-14940499 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 553-981 |
| Cow position: | chr19:14940155-14940583 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 553-981 |
| Cow position: | chr19:20635634-20635206 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 268 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 225, 200 |
| Conread position: | 553-981 |
| Cow position: | chr19:23613683-23614111 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 268 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 553-983 |
| Cow position: | chr19:20635550-20635120 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 248, 239 |
| Conread position: | 553-983 |
| Cow position: | chr19:23649973-23650403 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 319 |
| Conread position: | 556-896 |
| Cow position: | chr19:14959650-14959311 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 309, 16 |
| Conread position: | 556-951 |
| Cow position: | chr19:23613350-23613745 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 224, 197 |
| Conread position: | 556-969 |
| Cow position: | chr19:23649388-23649801 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 298 |
| Conread position: | 556-974 |
| Cow position: | chr19:14939990-14940408 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-981 |
| Cow position: | chr19:20678121-20678546 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 50, 42 |
| Conread position: | 556-981 |
| Cow position: | chr19:23649304-23649729 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 556-982 |
| Cow position: | chr19:23649556-23649982 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 557-764 |
| Cow position: | chr19:20678458-20678665 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 148, 126 |
| Conread position: | 557-942 |
| Cow position: | chr19:14940663-14941048 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-981 |
| Cow position: | chr19:23649725-23650149 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 298 |
| Conread position: | 557-983 |
| Cow position: | chr19:23614275-23614701 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 557-984 |
| Cow position: | chr19:43570379-43569962 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 312, 101 |
| Conread position: | 559-981 |
| Cow position: | chr19:23597202-23597624 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 560-981 |
| Cow position: | chr19:23649812-23650233 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 312 |
| Conread position: | 560-983 |
| Cow position: | chr19:20677453-20677876 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 218, 207 |
| Conread position: | 572-930 |
| Cow position: | chr19:20635699-20635341 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 304, 278 |
| Conread position: | 574-983 |
| Cow position: | chr19:14960455-14960048 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 306, 0 |
| Conread position: | 578-981 |
| Cow position: | chr19:14959302-14958905 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 280, 181 |
| Conread position: | 578-983 |
| Cow position: | chr19:14948442-14948038 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 37 |
| Conread position: | 578-984 |
| Cow position: | chr19:14959711-14959307 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 623-983 |
| Cow position: | chr19:23596849-23597206 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 236, 184 |
| Conread position: | 625-981 |
| Cow position: | chr19:23649289-23649645 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 638-981 |
| Cow position: | chr19:14939988-14940331 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 640-983 |
| Cow position: | chr19:23613350-23613693 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 210, 224 |
| Conread position: | 712-983 |
| Cow position: | chr19:23649292-23649563 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 159, 142 |
Show alignments to all cow chromosomes.