Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 406-983 |
| Cow position: | chr2:82799793-82800373 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 554 |
| Conread position: | 407-983 |
| Cow position: | chr2:82799626-82800205 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 477-974 |
| Cow position: | chr2:82799948-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 479-983 |
| Cow position: | chr2:86465607-86466113 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 490-981 |
| Cow position: | chr2:86465113-86465607 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 25, 67 |
| Conread position: | 533-873 |
| Cow position: | chr2:5874449-5874109 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 81 |
| Conread position: | 533-983 |
| Cow position: | chr2:5874617-5874167 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 535-933 |
| Cow position: | chr2:78754409-78754801 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 535-954 |
| Cow position: | chr2:78755231-78755644 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 535-981 |
| Cow position: | chr2:78754659-78755089 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 110, 31 |
| Conread position: | 535-981 |
| Cow position: | chr2:78754895-78755340 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 535-983 |
| Cow position: | chr2:5875119-5874671 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 535-983 |
| Cow position: | chr2:82799589-82800037 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 426 |
| Conread position: | 536-980 |
| Cow position: | chr2:82799506-82799950 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 336 |
| Conread position: | 553-933 |
| Cow position: | chr2:86465767-86466147 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 166, 174 |
| Conread position: | 555-924 |
| Cow position: | chr2:86465265-86465634 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 273, 277 |
| Conread position: | 556-812 |
| Cow position: | chr2:78756089-78756343 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 556-930 |
| Cow position: | chr2:78754262-78754634 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 208, 186 |
| Conread position: | 556-932 |
| Cow position: | chr2:86465854-86466228 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 79, 87 |
| Conread position: | 556-981 |
| Cow position: | chr2:78754832-78755257 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 272 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 387, 401 |
| Conread position: | 556-981 |
| Cow position: | chr2:78755419-78755841 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 209, 109 |
| Conread position: | 556-983 |
| Cow position: | chr2:5874846-5874419 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 145 |
| Conread position: | 557-896 |
| Cow position: | chr2:78756005-78756343 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 49, 109 |
| Conread position: | 557-924 |
| Cow position: | chr2:48689540-48689174 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 62, 40 |
| Conread position: | 557-936 |
| Cow position: | chr2:5874509-5874130 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 557-982 |
| Cow position: | chr2:5874761-5874336 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 276 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 557-983 |
| Cow position: | chr2:5874929-5874503 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 275 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 47, 54 |
| Conread position: | 557-983 |
| Cow position: | chr2:5875013-5874587 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 557-983 |
| Cow position: | chr2:86465351-86465777 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 558-983 |
| Cow position: | chr2:5875180-5874755 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 271 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 558-984 |
| Cow position: | chr2:78755922-78756347 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 142, 192 |
| Conread position: | 559-981 |
| Cow position: | chr2:78755589-78756009 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 62, 42 |
| Conread position: | 567-983 |
| Cow position: | chr2:86465109-86465525 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 572-853 |
| Cow position: | chr2:48689358-48689077 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 581-983 |
| Cow position: | chr2:82799467-82799869 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 617-980 |
| Cow position: | chr2:86465075-86465438 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 620-930 |
| Cow position: | chr2:78754812-78755122 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.