Cow genome map

Conread name: Ss1.1-Spl1-SPL01E070044.5

Conread position: 406-933
Cow position: chr22:14467990-14468520 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 327
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 127, 279

Conread position: 406-978
Cow position: chr22:12399745-12399170 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 73

Conread position: 406-981
Cow position: chr22:12431221-12430643 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 350
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 50, 28

Conread position: 406-981
Cow position: chr22:12476290-12475712 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 99

Conread position: 406-981
Cow position: chr22:12498969-12499547 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 99

Conread position: 407-821
Cow position: chr22:11641042-11641459 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 277
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 55, 72

Conread position: 407-896
Cow position: chr22:12458256-12457764 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 309
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 107, 208

Conread position: 407-983
Cow position: chr22:12432228-12431649 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 350
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 62, 55

Conread position: 407-984
Cow position: chr22:11640622-11641202 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 26

Conread position: 416-981
Cow position: chr22:12431799-12431231 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 63

Conread position: 476-983
Cow position: chr22:12499291-12499801 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 477-932
Cow position: chr22:46654267-46654725 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 299
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 135

Conread position: 477-981
Cow position: chr22:46654099-46654606 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 326
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 135

Conread position: 479-983
Cow position: chr22:12431988-12431481 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 133

Conread position: 532-978
Cow position: chr22:12385692-12385244 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 13

Conread position: 534-914
Cow position: chr22:12499604-12499985 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 253
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 20, 11

Conread position: 534-915
Cow position: chr22:12475655-12475273 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 257
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 20, 11

Conread position: 534-981
Cow position: chr22:12399782-12399335 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 20

Conread position: 534-981
Cow position: chr22:12475823-12475376 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 320

Conread position: 534-983
Cow position: chr22:12498932-12499381 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 319

Conread position: 535-924
Cow position: chr22:12458545-12458156 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 318

Conread position: 535-948
Cow position: chr22:12399193-12398780 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 22

Conread position: 535-981
Cow position: chr22:12431257-12430811 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 281
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 86, 68

Conread position: 535-983
Cow position: chr22:12399445-12398997 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 320

Conread position: 536-817
Cow position: chr22:11666679-11666960 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 192
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 77, 63

Conread position: 536-887
Cow position: chr22:12399108-12398757 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 230
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 81, 72

Conread position: 536-981
Cow position: chr22:11640670-11641115 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 12

Conread position: 536-981
Cow position: chr22:11640922-11641367 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 85

Conread position: 536-981
Cow position: chr22:12399528-12399083 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 536-981
Cow position: chr22:12399696-12399251 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 130

Conread position: 536-981
Cow position: chr22:12431424-12430979 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 21

Conread position: 536-981
Cow position: chr22:12432432-12431987 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 276
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 536-981
Cow position: chr22:12475905-12475460 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 536-983
Cow position: chr22:11666511-11666958 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 281
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 85, 70

Conread position: 536-983
Cow position: chr22:11701165-11701612 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 75

Conread position: 536-983
Cow position: chr22:12476325-12475878 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 321

Conread position: 536-984
Cow position: chr22:12432012-12431564 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 279
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 235, 222

Conread position: 537-945
Cow position: chr22:14429624-14430035 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 262
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 11, 153

Conread position: 552-933
Cow position: chr22:14429726-14430107 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 239
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 69, 49

Conread position: 553-803
Cow position: chr22:12399007-12398757 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 553-897
Cow position: chr22:12418778-12418434 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 224
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 66, 55

Conread position: 553-943
Cow position: chr22:46654262-46654652 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 239
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 106, 111

Conread position: 553-969
Cow position: chr22:12458611-12458195 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 68

Conread position: 553-978
Cow position: chr22:12385333-12384908 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 319

Conread position: 553-980
Cow position: chr22:46654430-46654856 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 264
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 62, 45

Conread position: 553-981
Cow position: chr22:14430399-14430827 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 253
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 211, 238

Conread position: 553-982
Cow position: chr22:46654094-46654523 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 268
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 106, 111

Conread position: 553-983
Cow position: chr22:12475720-12475290 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 52

Conread position: 553-983
Cow position: chr22:12499539-12499969 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 52

Conread position: 553-983
Cow position: chr22:14429811-14430241 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 284
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 148, 130

Conread position: 553-983
Cow position: chr22:14442041-14442471 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 262
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 155, 131

Conread position: 553-984
Cow position: chr22:12399343-12398912 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 319

Conread position: 556-932
Cow position: chr22:14430150-14430526 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 234
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 57, 42

Conread position: 556-981
Cow position: chr22:11640858-11641283 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 59

Conread position: 556-981
Cow position: chr22:14430486-14430911 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 262
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 59, 48

Conread position: 556-983
Cow position: chr22:12431740-12431313 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 312

Conread position: 556-984
Cow position: chr22:12385500-12385070 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 51

Conread position: 557-903
Cow position: chr22:12431319-12430973 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 227
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 557-930
Cow position: chr22:12458355-12457982 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 238
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 557-932
Cow position: chr22:12418858-12418483 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 57

Conread position: 557-938
Cow position: chr22:12458271-12457890 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 245
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 122, 132

Conread position: 557-969
Cow position: chr22:12432327-12431915 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 259
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 557-981
Cow position: chr22:11641027-11641451 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 306

Conread position: 557-981
Cow position: chr22:14430067-14430491 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 267
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 148, 127

Conread position: 557-983
Cow position: chr22:12418942-12418516 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 293

Conread position: 558-932
Cow position: chr22:12431822-12431448 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 246
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 61, 51

Conread position: 558-969
Cow position: chr22:12432494-12432083 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 253
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 558-981
Cow position: chr22:12475967-12475544 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 228

Conread position: 558-981
Cow position: chr22:12498872-12499295 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 56

Conread position: 558-983
Cow position: chr22:12419294-12418852 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 258
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 271, 0

Conread position: 559-762
Cow position: chr22:12544584-12544787 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 40

Conread position: 559-981
Cow position: chr22:11701104-11701526 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 274
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 139, 132

Conread position: 559-981
Cow position: chr22:12458437-12458015 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 40

Conread position: 559-983
Cow position: chr22:11666450-11666874 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 280
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 139, 130

Conread position: 559-983
Cow position: chr22:14442215-14442636 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 273
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 65, 69

Conread position: 560-981
Cow position: chr22:12385410-12384989 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 386

Conread position: 563-982
Cow position: chr22:11701276-11701695 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 45

Conread position: 564-981
Cow position: chr22:46654021-46654438 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 278
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 57, 44

Conread position: 566-933
Cow position: chr22:14467985-14468352 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 229
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 247, 225

Conread position: 566-981
Cow position: chr22:12476379-12475964 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 566-983
Cow position: chr22:11640616-11641033 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 386

Conread position: 566-983
Cow position: chr22:12419017-12418600 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 42

Conread position: 567-981
Cow position: chr22:12498797-12499211 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 266
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 34, 26

Conread position: 570-981
Cow position: chr22:12458174-12457763 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 37, 22

Conread position: 572-981
Cow position: chr22:12399828-12399419 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 264
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 32, 27

Conread position: 581-920
Cow position: chr22:12544942-12545281 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 216
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 145, 139

Conread position: 620-983
Cow position: chr22:12476409-12476046 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 235
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 156, 161

Conread position: 621-983
Cow position: chr22:12458627-12458265 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 622-796
Cow position: chr22:12545394-12545568 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 630-981
Cow position: chr22:12399930-12399587 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 224
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 230, 14

Conread position: 637-931
Cow position: chr22:12432499-12432205 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 182
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 222, 218

Conread position: 653-984
Cow position: chr22:11701114-11701445 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 219
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 198, 207

Conread position: 664-983
Cow position: chr22:14467999-14468318 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 203
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 212, 202

Conread position: 682-944
Cow position: chr22:12419338-12419076 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 174
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 177, 173

Conread position: 789-981
Cow position: chr22:12419315-12419123 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.