Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 405-730 |
| Cow position: | chr23:24535779-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 406-796 |
| Cow position: | chr23:24560455-24560062 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 129, 196 |
| Conread position: | 406-894 |
| Cow position: | chr23:24560623-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 406-973 |
| Cow position: | chr23:24547231-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 406-983 |
| Cow position: | chr23:24639399-24639979 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 74 |
| Conread position: | 407-736 |
| Cow position: | chr23:24654049-24654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 455-806 |
| Cow position: | chr23:24654015-24654367 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 476-812 |
| Cow position: | chr23:24535792-24535453 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 59, 141 |
| Conread position: | 479-804 |
| Cow position: | chr23:25660407-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 533-810 |
| Cow position: | chr23:24626453-24626730 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 533-887 |
| Cow position: | chr23:24626369-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 82 |
| Conread position: | 533-957 |
| Cow position: | chr23:25698595-25698171 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 287 |
| Conread position: | 533-983 |
| Cow position: | chr23:24639277-24639727 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 534-734 |
| Cow position: | chr23:24639866-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 534-981 |
| Cow position: | chr23:25698678-25698231 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 286 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 87, 82 |
| Conread position: | 534-983 |
| Cow position: | chr23:24547268-24546819 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 321 |
| Conread position: | 534-983 |
| Cow position: | chr23:24639614-24640063 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 239 |
| Conread position: | 535-718 |
| Cow position: | chr23:25723896-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 535-789 |
| Cow position: | chr23:24522421-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 86, 80 |
| Conread position: | 535-894 |
| Cow position: | chr23:25626678-25627037 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 268, 280 |
| Conread position: | 535-946 |
| Cow position: | chr23:25660298-25660710 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 72 |
| Conread position: | 535-961 |
| Cow position: | chr23:25698509-25698083 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 535-969 |
| Cow position: | chr23:25626093-25626527 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 535-983 |
| Cow position: | chr23:24522670-24522225 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 291 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 329, 64 |
| Conread position: | 535-983 |
| Cow position: | chr23:25626009-25626457 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 536-818 |
| Cow position: | chr23:24639784-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 536-937 |
| Cow position: | chr23:24535813-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 536-980 |
| Cow position: | chr23:25660215-25660659 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 536-981 |
| Cow position: | chr23:24560574-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 548-984 |
| Cow position: | chr23:24626300-24626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 66 |
| Conread position: | 553-902 |
| Cow position: | chr23:24639717-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 553-983 |
| Cow position: | chr23:24535964-24535534 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 273 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 85, 98 |
| Conread position: | 556-855 |
| Cow position: | chr23:24522484-24522185 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-936 |
| Cow position: | chr23:24522568-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-981 |
| Cow position: | chr23:25626198-25626620 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 331, 336 |
| Conread position: | 556-981 |
| Cow position: | chr23:25660153-25660576 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 13 |
| Conread position: | 556-983 |
| Cow position: | chr23:24560890-24560463 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 299 |
| Conread position: | 556-983 |
| Cow position: | chr23:25626366-25626790 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 164, 169 |
| Conread position: | 557-748 |
| Cow position: | chr23:24626561-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 557-873 |
| Cow position: | chr23:25660404-25660720 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-886 |
| Cow position: | chr23:25724042-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 557-981 |
| Cow position: | chr23:24522814-24522395 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 222, 24 |
| Conread position: | 557-981 |
| Cow position: | chr23:24560637-24560213 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-981 |
| Cow position: | chr23:24560805-24560381 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-983 |
| Cow position: | chr23:24639217-24639643 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 277 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 64, 52 |
| Conread position: | 558-802 |
| Cow position: | chr23:25698316-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 560-981 |
| Cow position: | chr23:24639388-24639809 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 560-981 |
| Cow position: | chr23:25626454-25626872 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 563-845 |
| Cow position: | chr23:24521971-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 200, 243 |
| Conread position: | 566-904 |
| Cow position: | chr23:24654043-24654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 298, 274 |
| Conread position: | 570-943 |
| Cow position: | chr23:24536031-24535658 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-957 |
| Cow position: | chr23:25625962-25626347 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 572-978 |
| Cow position: | chr23:24560706-24560300 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 38 |
| Conread position: | 578-969 |
| Cow position: | chr23:25724105-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 578-983 |
| Cow position: | chr23:24547308-24546903 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 621-981 |
| Cow position: | chr23:24639197-24639557 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 155, 159 |
| Conread position: | 631-980 |
| Cow position: | chr23:24560897-24560550 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 631-981 |
| Cow position: | chr23:24536054-24535704 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 150, 144 |
| Conread position: | 633-948 |
| Cow position: | chr23:24654024-24654341 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 639-983 |
| Cow position: | chr23:25660152-25660494 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 662-983 |
| Cow position: | chr23:25724105-25723784 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 690-981 |
| Cow position: | chr23:24626274-24626565 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 255, 264 |
| Conread position: | 695-981 |
| Cow position: | chr23:25626001-25626287 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 716-983 |
| Cow position: | chr23:24560896-24560631 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 718-981 |
| Cow position: | chr23:25660145-25660408 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 720-983 |
| Cow position: | chr23:25724131-25723868 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 48, 35 |
Show alignments to all cow chromosomes.