Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 404-981 |
| Cow position: | chr24:17078333-17077753 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 84 |
| Conread position: | 406-942 |
| Cow position: | chr24:17035692-17035153 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 407-981 |
| Cow position: | chr24:17036111-17035534 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 72 |
| Conread position: | 407-983 |
| Cow position: | chr24:17036363-17035784 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 84 |
| Conread position: | 477-969 |
| Cow position: | chr24:17035537-17035042 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 533-727 |
| Cow position: | chr24:17077697-17077503 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 533-981 |
| Cow position: | chr24:17036567-17036122 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 533-983 |
| Cow position: | chr24:17070519-17070969 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 533-984 |
| Cow position: | chr24:17078033-17077581 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 81 |
| Conread position: | 535-810 |
| Cow position: | chr24:17035224-17034949 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 535-981 |
| Cow position: | chr24:17036148-17035702 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-983 |
| Cow position: | chr24:17078283-17077835 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 536-793 |
| Cow position: | chr24:17013227-17013484 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 82, 72 |
| Conread position: | 536-864 |
| Cow position: | chr24:17035307-17034979 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 244, 232 |
| Conread position: | 536-893 |
| Cow position: | chr24:17070690-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 536-974 |
| Cow position: | chr24:17077946-17077508 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 536-981 |
| Cow position: | chr24:17035643-17035198 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 63 |
| Conread position: | 536-981 |
| Cow position: | chr24:17035895-17035450 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 549-774 |
| Cow position: | chr24:16986423-16986647 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 553-734 |
| Cow position: | chr24:17070875-17071056 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-961 |
| Cow position: | chr24:17070627-17071031 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 557-979 |
| Cow position: | chr24:17078093-17077671 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 557-981 |
| Cow position: | chr24:17035706-17035282 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 397 |
| Conread position: | 557-981 |
| Cow position: | chr24:17036462-17036038 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 558-983 |
| Cow position: | chr24:17036627-17036204 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 560-981 |
| Cow position: | chr24:17070462-17070883 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 569-981 |
| Cow position: | chr24:17070387-17070799 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 572-894 |
| Cow position: | chr24:17013179-17013501 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 624-984 |
| Cow position: | chr24:17013147-17013507 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 628-983 |
| Cow position: | chr24:17070362-17070717 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 662-862 |
| Cow position: | chr24:16986451-16986649 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 117, 93 |
Show alignments to all cow chromosomes.