Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 389-981 |
| Cow position: | chr28:7757579-7758176 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 105 |
| Conread position: | 407-803 |
| Cow position: | chr28:7757935-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 109, 376 |
| Conread position: | 407-969 |
| Cow position: | chr28:7757767-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 209 |
| Conread position: | 412-983 |
| Cow position: | chr28:7758108-7758666 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 58 |
| Conread position: | 415-983 |
| Cow position: | chr28:34695851-34696422 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 471-981 |
| Cow position: | chr28:7758322-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 84 |
| Conread position: | 477-983 |
| Cow position: | chr28:11334136-11333627 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 147 |
| Conread position: | 533-888 |
| Cow position: | chr28:11333825-11333470 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 89, 82 |
| Conread position: | 534-961 |
| Cow position: | chr28:7757477-7757904 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 338, 332 |
| Conread position: | 534-983 |
| Cow position: | chr28:11333992-11333543 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 535-729 |
| Cow position: | chr28:9253417-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 535-812 |
| Cow position: | chr28:9253333-9253610 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-812 |
| Cow position: | chr28:9299283-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 535-901 |
| Cow position: | chr28:33210290-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 535-983 |
| Cow position: | chr28:7757814-7758262 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 535-983 |
| Cow position: | chr28:7810326-7810765 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 535-984 |
| Cow position: | chr28:9298712-9299158 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 536-769 |
| Cow position: | chr28:9290481-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 536-981 |
| Cow position: | chr28:9253082-9253527 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 536-981 |
| Cow position: | chr28:9253166-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 538-819 |
| Cow position: | chr28:7810656-7810937 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 550-983 |
| Cow position: | chr28:34695821-34696254 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 114 |
| Conread position: | 553-933 |
| Cow position: | chr28:34679562-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 556-818 |
| Cow position: | chr28:9290418-9290679 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 245, 49 |
| Conread position: | 556-896 |
| Cow position: | chr28:9290000-9290339 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 217 |
| Conread position: | 556-963 |
| Cow position: | chr28:34673522-34673929 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 114, 140 |
| Conread position: | 556-981 |
| Cow position: | chr28:7757415-7757840 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-981 |
| Cow position: | chr28:9253018-9253443 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-896 |
| Cow position: | chr28:9299221-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 141, 148 |
| Conread position: | 557-901 |
| Cow position: | chr28:34696248-34696590 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 557-903 |
| Cow position: | chr28:7810591-7810937 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 223, 218 |
| Conread position: | 557-969 |
| Cow position: | chr28:34696164-34696576 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 393 |
| Conread position: | 557-983 |
| Cow position: | chr28:9290252-9290676 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 557-983 |
| Cow position: | chr28:33210228-33210655 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 204 |
| Conread position: | 557-983 |
| Cow position: | chr28:34695744-34696170 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 307, 293 |
| Conread position: | 557-983 |
| Cow position: | chr28:34696080-34696506 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 236 |
| Conread position: | 558-938 |
| Cow position: | chr28:34673356-34673736 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 559-940 |
| Cow position: | chr28:7758006-7758387 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 559-961 |
| Cow position: | chr28:7757334-7757736 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 59 |
| Conread position: | 560-981 |
| Cow position: | chr28:9252938-9253359 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 264 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 578-931 |
| Cow position: | chr28:7810285-7810629 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 578-981 |
| Cow position: | chr28:7810528-7810931 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 620-903 |
| Cow position: | chr28:7810252-7810526 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 638-980 |
| Cow position: | chr28:9299218-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 318, 314 |
| Conread position: | 701-981 |
| Cow position: | chr28:7757392-7757672 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 704-981 |
| Cow position: | chr28:7810252-7810520 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.