Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 406-948 |
| Cow position: | chr3:68027190-68027735 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 323 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 119, 154 |
| Conread position: | 407-960 |
| Cow position: | chr3:68045784-68046340 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 150 |
| Conread position: | 463-895 |
| Cow position: | chr3:62722002-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 274 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 534-981 |
| Cow position: | chr3:62742838-62743264 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 535-948 |
| Cow position: | chr3:62742592-62743001 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 83, 49 |
| Conread position: | 535-951 |
| Cow position: | chr3:68045747-68046164 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 535-981 |
| Cow position: | chr3:62722347-62721901 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 535-981 |
| Cow position: | chr3:68027154-68027600 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 326, 319 |
| Conread position: | 535-983 |
| Cow position: | chr3:62722095-62721647 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 535-983 |
| Cow position: | chr3:62722179-62721731 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 316 |
| Conread position: | 536-981 |
| Cow position: | chr3:68045832-68046277 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 282 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 83, 73 |
| Conread position: | 553-812 |
| Cow position: | chr3:62742358-62742617 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 98, 91 |
| Conread position: | 553-981 |
| Cow position: | chr3:62722245-62721817 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-948 |
| Cow position: | chr3:62721990-62721598 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-978 |
| Cow position: | chr3:68027091-68027513 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 557-802 |
| Cow position: | chr3:20195058-20195303 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-969 |
| Cow position: | chr3:20194890-20195302 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 557-980 |
| Cow position: | chr3:68045685-68046108 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 557-981 |
| Cow position: | chr3:68027260-68027684 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 304, 298 |
| Conread position: | 557-983 |
| Cow position: | chr3:20194806-20195232 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 142 |
| Conread position: | 560-984 |
| Cow position: | chr3:62742448-62742868 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 10, 133 |
| Conread position: | 566-769 |
| Cow position: | chr3:16020370-16020171 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 566-983 |
| Cow position: | chr3:68045610-68046027 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 271 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 299, 289 |
| Conread position: | 578-982 |
| Cow position: | chr3:62743034-62743433 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 283, 81 |
| Conread position: | 578-983 |
| Cow position: | chr3:20194743-20195148 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 579-981 |
| Cow position: | chr3:77351134-77350740 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 126, 30 |
| Conread position: | 580-981 |
| Cow position: | chr3:68027031-68027432 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 284, 274 |
| Conread position: | 620-981 |
| Cow position: | chr3:68045580-68045941 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 169, 164 |
| Conread position: | 641-886 |
| Cow position: | chr3:20194446-20194691 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 217, 212 |
| Conread position: | 725-977 |
| Cow position: | chr3:20194446-20194698 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 232, 226 |
| Conread position: | 813-983 |
| Cow position: | chr3:20194726-20194896 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.