Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 407-728 |
| Cow position: | chr6:49362522-49362834 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 407-819 |
| Cow position: | chr6:49341007-49341422 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 68, 84 |
| Conread position: | 407-981 |
| Cow position: | chr6:49340419-49340996 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 150 |
| Conread position: | 416-981 |
| Cow position: | chr6:49396317-49396885 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 477-953 |
| Cow position: | chr6:49340993-49341470 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 447 |
| Conread position: | 477-981 |
| Cow position: | chr6:49340573-49341080 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 80 |
| Conread position: | 535-842 |
| Cow position: | chr6:49396607-49396914 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-981 |
| Cow position: | chr6:49340970-49341416 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 320 |
| Conread position: | 535-983 |
| Cow position: | chr6:49340718-49341166 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 536-756 |
| Cow position: | chr6:49396776-49396996 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 536-981 |
| Cow position: | chr6:49340803-49341248 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 18 |
| Conread position: | 551-983 |
| Cow position: | chr6:49340239-49340662 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 553-983 |
| Cow position: | chr6:49340400-49340830 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-810 |
| Cow position: | chr6:49396712-49396966 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-943 |
| Cow position: | chr6:49396544-49396931 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 226, 232 |
| Conread position: | 556-981 |
| Cow position: | chr6:49340907-49341332 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 299 |
| Conread position: | 557-983 |
| Cow position: | chr6:49428312-49428738 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 105 |
| Conread position: | 557-983 |
| Cow position: | chr6:49428396-49428822 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 57 |
| Conread position: | 557-983 |
| Cow position: | chr6:49428480-49428906 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 300 |
| Conread position: | 557-983 |
| Cow position: | chr6:49428564-49428990 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 144 |
| Conread position: | 557-983 |
| Cow position: | chr6:49428732-49429158 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 557-983 |
| Cow position: | chr6:49428816-49429242 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 319, 310 |
| Conread position: | 557-983 |
| Cow position: | chr6:49428984-49429410 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 113 |
| Conread position: | 557-984 |
| Cow position: | chr6:49429068-49429495 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 559-983 |
| Cow position: | chr6:49428230-49428654 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 146 |
| Conread position: | 563-939 |
| Cow position: | chr6:49396137-49396507 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 567-983 |
| Cow position: | chr6:49395889-49396299 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 209, 218 |
| Conread position: | 581-981 |
| Cow position: | chr6:49396233-49396633 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 625-983 |
| Cow position: | chr6:49340388-49340746 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 332 |
| Conread position: | 630-931 |
| Cow position: | chr6:49362328-49362629 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 234, 214 |
| Conread position: | 806-983 |
| Cow position: | chr6:49428224-49428402 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
Show alignments to all cow chromosomes.