Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 406-976 |
| Cow position: | chr7:28846437-28847009 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 337 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 116, 388 |
| Conread position: | 407-984 |
| Cow position: | chr7:3180216-3180796 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 371 |
| Conread position: | 455-852 |
| Cow position: | chr7:1439870-1440269 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 96 |
| Conread position: | 455-980 |
| Cow position: | chr7:1439704-1440229 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 311 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 63, 155 |
| Conread position: | 463-981 |
| Cow position: | chr7:1014838-1015363 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 467-983 |
| Cow position: | chr7:18390153-18390672 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 145 |
| Conread position: | 531-981 |
| Cow position: | chr7:8277738-8278188 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 533-901 |
| Cow position: | chr7:11434588-11434227 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 49 |
| Conread position: | 533-981 |
| Cow position: | chr7:3180177-3180625 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 533-981 |
| Cow position: | chr7:8325549-8325997 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 65 |
| Conread position: | 534-809 |
| Cow position: | chr7:42878543-42878267 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 534-981 |
| Cow position: | chr7:3179926-3180373 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 535-762 |
| Cow position: | chr7:8325887-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 145, 170 |
| Conread position: | 535-780 |
| Cow position: | chr7:18390560-18390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-885 |
| Cow position: | chr7:42878626-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 535-930 |
| Cow position: | chr7:1439869-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 535-930 |
| Cow position: | chr7:8324795-8325190 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 169, 148 |
| Conread position: | 535-930 |
| Cow position: | chr7:8325299-8325694 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 535-941 |
| Cow position: | chr7:18390392-18390798 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-943 |
| Cow position: | chr7:1015085-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 371, 0 |
| Conread position: | 535-978 |
| Cow position: | chr7:42878794-42878351 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 535-981 |
| Cow position: | chr7:1014833-1015279 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 335 |
| Conread position: | 535-981 |
| Cow position: | chr7:3179759-3180205 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 535-981 |
| Cow position: | chr7:8277658-8278104 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 535-981 |
| Cow position: | chr7:42878962-42878516 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 233 |
| Conread position: | 535-981 |
| Cow position: | chr7:42879130-42878684 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 535-983 |
| Cow position: | chr7:1014335-1014777 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 283 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 535-983 |
| Cow position: | chr7:1014419-1014861 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 535-983 |
| Cow position: | chr7:18390056-18390504 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 535-984 |
| Cow position: | chr7:8325635-8326084 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 536-963 |
| Cow position: | chr7:28846654-28847081 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 218, 209 |
| Conread position: | 549-978 |
| Cow position: | chr7:1014680-1015108 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 550-852 |
| Cow position: | chr7:1438409-1438712 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 552-848 |
| Cow position: | chr7:8277255-8277551 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 69, 45 |
| Conread position: | 552-933 |
| Cow position: | chr7:8324728-8325109 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 552-981 |
| Cow position: | chr7:11601024-11600595 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 276 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 553-819 |
| Cow position: | chr7:8278096-8278362 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 141, 130 |
| Conread position: | 553-930 |
| Cow position: | chr7:11600939-11600562 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 553-948 |
| Cow position: | chr7:1015019-1015414 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 220 |
| Conread position: | 553-961 |
| Cow position: | chr7:18390326-18390734 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 404 |
| Conread position: | 553-981 |
| Cow position: | chr7:3179861-3180289 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 45 |
| Conread position: | 553-981 |
| Cow position: | chr7:3180029-3180457 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 127 |
| Conread position: | 553-981 |
| Cow position: | chr7:3180113-3180541 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 222 |
| Conread position: | 553-981 |
| Cow position: | chr7:8278012-8278440 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 553-981 |
| Cow position: | chr7:11601107-11600679 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 553-981 |
| Cow position: | chr7:42879028-42878600 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 61 |
| Conread position: | 554-904 |
| Cow position: | chr7:1014270-1014620 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 303, 295 |
| Conread position: | 556-891 |
| Cow position: | chr7:11600768-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 224, 219 |
| Conread position: | 556-933 |
| Cow position: | chr7:8277343-8277720 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 157, 136 |
| Conread position: | 556-981 |
| Cow position: | chr7:1014770-1015195 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 273 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 125, 131 |
| Conread position: | 556-983 |
| Cow position: | chr7:11601188-11600761 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 304, 296 |
| Conread position: | 557-933 |
| Cow position: | chr7:8325489-8325865 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 557-969 |
| Cow position: | chr7:12293348-12293760 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 397, 393 |
| Conread position: | 557-970 |
| Cow position: | chr7:11600851-11600438 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 315, 299 |
| Conread position: | 557-970 |
| Cow position: | chr7:42878688-42878275 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 57 |
| Conread position: | 557-979 |
| Cow position: | chr7:12293516-12293938 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 397, 387 |
| Conread position: | 557-983 |
| Cow position: | chr7:28846507-28846933 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 557-983 |
| Cow position: | chr7:42879276-42878850 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 558-983 |
| Cow position: | chr7:18389995-18390420 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 96, 112 |
| Conread position: | 560-981 |
| Cow position: | chr7:42879189-42878768 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 562-979 |
| Cow position: | chr7:12293437-12293854 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 46, 50 |
| Conread position: | 563-932 |
| Cow position: | chr7:8325747-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 563-936 |
| Cow position: | chr7:8277854-8278227 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 579-852 |
| Cow position: | chr7:12293706-12293979 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 587-969 |
| Cow position: | chr7:12293630-12294012 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 290, 296 |
| Conread position: | 604-983 |
| Cow position: | chr7:18389963-18390336 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 621-981 |
| Cow position: | chr7:42879296-42878936 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 150, 158 |
| Conread position: | 622-924 |
| Cow position: | chr7:1439451-1439756 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 243, 137 |
| Conread position: | 622-981 |
| Cow position: | chr7:1014668-1015027 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 624-981 |
| Cow position: | chr7:11601204-11600847 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 235, 247 |
| Conread position: | 632-981 |
| Cow position: | chr7:28846498-28846847 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 178, 161 |
| Conread position: | 632-981 |
| Cow position: | chr7:42879369-42879020 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 656-969 |
| Cow position: | chr7:12293279-12293592 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 664-983 |
| Cow position: | chr7:28846446-28846765 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 730-983 |
| Cow position: | chr7:12293269-12293522 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 124 |
| Conread position: | 736-920 |
| Cow position: | chr7:16643324-16643508 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.