Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 407-948 |
| Cow position: | chr8:45201369-45201913 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 333 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 437-878 |
| Cow position: | chr8:48406745-48406301 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 288 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 83, 120 |
| Conread position: | 531-978 |
| Cow position: | chr8:46816523-46816970 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 531-981 |
| Cow position: | chr8:45201412-45201862 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 533-978 |
| Cow position: | chr8:48407402-48406957 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 318 |
| Conread position: | 534-808 |
| Cow position: | chr8:45201667-45201941 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 534-932 |
| Cow position: | chr8:55581303-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 80, 56 |
| Conread position: | 535-812 |
| Cow position: | chr8:48406560-48406283 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 236, 242 |
| Conread position: | 535-903 |
| Cow position: | chr8:46816947-46817315 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 535-903 |
| Cow position: | chr8:48407148-48406780 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 317 |
| Conread position: | 535-978 |
| Cow position: | chr8:48407568-48407125 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 535-981 |
| Cow position: | chr8:45201164-45201610 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 535-981 |
| Cow position: | chr8:45201248-45201694 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 535-981 |
| Cow position: | chr8:46816443-46816889 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 535-982 |
| Cow position: | chr8:48407232-48406785 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-983 |
| Cow position: | chr8:55581052-55581500 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 536-848 |
| Cow position: | chr8:46817032-46817344 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 551-983 |
| Cow position: | chr8:45201011-45201444 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 553-820 |
| Cow position: | chr8:6958000-6957734 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 553-981 |
| Cow position: | chr8:46816713-46817141 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 236 |
| Conread position: | 553-981 |
| Cow position: | chr8:55580986-55581414 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 553-981 |
| Cow position: | chr8:55581154-55581582 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 217 |
| Conread position: | 553-983 |
| Cow position: | chr8:46816209-46816639 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-886 |
| Cow position: | chr8:55581409-55581739 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 556-943 |
| Cow position: | chr8:46816128-46816515 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-975 |
| Cow position: | chr8:55581241-55581660 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 222, 206 |
| Conread position: | 556-981 |
| Cow position: | chr8:46816632-46817057 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 212, 197 |
| Conread position: | 556-981 |
| Cow position: | chr8:46816800-46817225 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-981 |
| Cow position: | chr8:48407631-48407206 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 557-924 |
| Cow position: | chr8:48406874-48406507 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 103, 120 |
| Conread position: | 557-973 |
| Cow position: | chr8:46816885-46817301 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 557-981 |
| Cow position: | chr8:46816297-46816721 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 557-981 |
| Cow position: | chr8:46816381-46816805 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 557-981 |
| Cow position: | chr8:48406706-48406282 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 382, 388 |
| Conread position: | 557-981 |
| Cow position: | chr8:48407294-48406870 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 113, 125 |
| Conread position: | 557-981 |
| Cow position: | chr8:48407462-48407038 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 557-981 |
| Cow position: | chr8:55580906-55581330 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 297 |
| Conread position: | 558-981 |
| Cow position: | chr8:46816046-46816469 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 228 |
| Conread position: | 559-949 |
| Cow position: | chr8:45200936-45201326 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 100, 107 |
| Conread position: | 563-981 |
| Cow position: | chr8:45201360-45201778 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-981 |
| Cow position: | chr8:55580753-55581162 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 577-904 |
| Cow position: | chr8:6958060-6957734 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 271, 289 |
| Conread position: | 579-981 |
| Cow position: | chr8:55580844-55581246 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 608-980 |
| Cow position: | chr8:45200899-45201273 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 620-981 |
| Cow position: | chr8:48406727-48406366 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 623-981 |
| Cow position: | chr8:46815940-46816301 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 25, 139 |
| Conread position: | 632-980 |
| Cow position: | chr8:46816036-46816384 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 137, 157 |
| Conread position: | 636-981 |
| Cow position: | chr8:48407635-48407290 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.