Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01E070044.5 |
| Conread position: | 407-981 |
| Cow position: | chrX:25309905-25310482 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 350 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 116, 204 |
| Conread position: | 475-729 |
| Cow position: | chrX:25310310-25310566 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 531-932 |
| Cow position: | chrX:25325277-25324876 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 253 |
| Conread position: | 532-980 |
| Cow position: | chrX:13826721-13826273 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 75, 80 |
| Conread position: | 534-981 |
| Cow position: | chrX:25309699-25310146 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 535-763 |
| Cow position: | chrX:29045681-29045453 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 535-896 |
| Cow position: | chrX:25310204-25310565 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 535-903 |
| Cow position: | chrX:29045030-29044662 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 535-943 |
| Cow position: | chrX:25325021-25324613 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 535-961 |
| Cow position: | chrX:25324769-25324343 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 535-981 |
| Cow position: | chrX:25325189-25324743 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 535-981 |
| Cow position: | chrX:25325357-25324911 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 535-981 |
| Cow position: | chrX:25325609-25325163 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 536-983 |
| Cow position: | chrX:25325104-25324657 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 552-848 |
| Cow position: | chrX:29045748-29045452 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 553-896 |
| Cow position: | chrX:29045831-29045488 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 553-981 |
| Cow position: | chrX:25324919-25324491 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 57 |
| Conread position: | 553-981 |
| Cow position: | chrX:25325675-25325247 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 553-981 |
| Cow position: | chrX:25325759-25325331 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 305, 301 |
| Conread position: | 553-984 |
| Cow position: | chrX:25324667-25324236 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 235, 230 |
| Conread position: | 555-975 |
| Cow position: | chrX:14181476-14181056 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 26, 21 |
| Conread position: | 556-961 |
| Cow position: | chrX:29045093-29044688 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 556-979 |
| Cow position: | chrX:14181559-14181136 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 556-981 |
| Cow position: | chrX:25309889-25310314 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 556-981 |
| Cow position: | chrX:29045177-29044752 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-981 |
| Cow position: | chrX:29045261-29044836 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 194 |
| Conread position: | 556-983 |
| Cow position: | chrX:25325420-25324993 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 227, 233 |
| Conread position: | 557-963 |
| Cow position: | chrX:13826612-13826206 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 259 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 62, 51 |
| Conread position: | 557-983 |
| Cow position: | chrX:13826780-13826354 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 557-983 |
| Cow position: | chrX:13826948-13826522 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 557-984 |
| Cow position: | chrX:25310142-25310569 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 291, 299 |
| Conread position: | 559-983 |
| Cow position: | chrX:13826862-13826438 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 560-921 |
| Cow position: | chrX:14181303-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 560-983 |
| Cow position: | chrX:14181639-14181216 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 565-980 |
| Cow position: | chrX:29045336-29044921 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 40, 52 |
| Conread position: | 587-920 |
| Cow position: | chrX:13826498-13826165 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 271, 267 |
| Conread position: | 618-965 |
| Cow position: | chrX:14181329-14180982 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 638-981 |
| Cow position: | chrX:29045830-29045487 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 671-980 |
| Cow position: | chrX:25309668-25309977 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 180, 187 |
Show alignments to all cow chromosomes.