Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-164 |
| Cow position: | chr1:18241475-18241312 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 24, 53 |
| Conread position: | 1-245 |
| Cow position: | chr1:74285745-74285501 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 194, 35 |
| Conread position: | 1-290 |
| Cow position: | chr1:69921390-69921094 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-366 |
| Cow position: | chr1:22619594-22619239 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 53 |
| Conread position: | 1-371 |
| Cow position: | chr1:42737502-42737863 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-371 |
| Cow position: | chr1:47162583-47162213 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 124, 34 |
| Conread position: | 1-371 |
| Cow position: | chr1:85779402-85779020 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 174 |
| Conread position: | 1-371 |
| Cow position: | chr1:94660718-94661102 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-377 |
| Cow position: | chr1:24652320-24652695 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 165 |
| Conread position: | 1-378 |
| Cow position: | chr1:55321029-55320646 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 25 |
| Conread position: | 1-382 |
| Cow position: | chr1:5503011-5503398 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 1-382 |
| Cow position: | chr1:12061169-12060776 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 1-382 |
| Cow position: | chr1:25551006-25551395 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 34 |
| Conread position: | 1-382 |
| Cow position: | chr1:30519642-30520026 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 36 |
| Conread position: | 1-382 |
| Cow position: | chr1:30533976-30533590 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 32 |
| Conread position: | 1-382 |
| Cow position: | chr1:32566877-32566494 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 1-382 |
| Cow position: | chr1:33713113-33713501 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 49 |
| Conread position: | 1-382 |
| Cow position: | chr1:34693729-34694113 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 32 |
| Conread position: | 1-382 |
| Cow position: | chr1:40511969-40511592 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 1-382 |
| Cow position: | chr1:56193126-56192733 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 178 |
| Conread position: | 1-382 |
| Cow position: | chr1:63604729-63604341 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 33 |
| Conread position: | 1-382 |
| Cow position: | chr1:68606497-68606118 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 1-382 |
| Cow position: | chr1:72984542-72984904 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 50 |
| Conread position: | 1-382 |
| Cow position: | chr1:81777478-81777857 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-382 |
| Cow position: | chr1:102433996-102433610 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 32 |
| Conread position: | 1-383 |
| Cow position: | chr1:28874125-28874504 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 34 |
| Conread position: | 1-384 |
| Cow position: | chr1:26517843-26517457 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-389 |
| Cow position: | chr1:72038525-72038129 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 1-389 |
| Cow position: | chr1:73197979-73197596 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 24 |
| Conread position: | 2-258 |
| Cow position: | chr1:59209104-59208846 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 195, 164 |
| Conread position: | 2-381 |
| Cow position: | chr1:5356172-5356557 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 34 |
| Conread position: | 3-172 |
| Cow position: | chr1:11291067-11290900 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-258 |
| Cow position: | chr1:60340347-60340597 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 193, 51 |
| Conread position: | 3-372 |
| Cow position: | chr1:82653710-82654082 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-373 |
| Cow position: | chr1:98658861-98658491 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 30 |
| Conread position: | 3-377 |
| Cow position: | chr1:67834087-67833706 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 20, 128 |
| Conread position: | 3-381 |
| Cow position: | chr1:17011687-17011306 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 33 |
| Conread position: | 3-381 |
| Cow position: | chr1:20525523-20525908 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-381 |
| Cow position: | chr1:39544838-39545216 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 52 |
| Conread position: | 3-381 |
| Cow position: | chr1:53199585-53199974 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 3-381 |
| Cow position: | chr1:55275987-55275601 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 3-381 |
| Cow position: | chr1:57423790-57423403 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 163 |
| Conread position: | 3-381 |
| Cow position: | chr1:61310267-61310650 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 51 |
| Conread position: | 3-381 |
| Cow position: | chr1:82912091-82911725 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 196, 33 |
| Conread position: | 3-381 |
| Cow position: | chr1:85792725-85793110 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-382 |
| Cow position: | chr1:9259525-9259915 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 176 |
| Conread position: | 3-382 |
| Cow position: | chr1:40575260-40575630 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 147 |
| Conread position: | 3-382 |
| Cow position: | chr1:40683695-40683311 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-382 |
| Cow position: | chr1:86595450-86595063 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 174 |
| Conread position: | 3-382 |
| Cow position: | chr1:91900070-91900456 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 31 |
| Conread position: | 3-384 |
| Cow position: | chr1:86547095-86546705 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 165 |
| Conread position: | 3-389 |
| Cow position: | chr1:33852334-33852706 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 51 |
| Conread position: | 3-389 |
| Cow position: | chr1:57657934-57658332 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 33 |
| Conread position: | 6-194 |
| Cow position: | chr1:76620634-76620446 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 130 |
| Conread position: | 6-377 |
| Cow position: | chr1:52358209-52357823 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 189, 48 |
| Conread position: | 6-382 |
| Cow position: | chr1:31365049-31364668 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 193, 48 |
| Conread position: | 6-382 |
| Cow position: | chr1:33551976-33552359 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 48 |
| Conread position: | 6-382 |
| Cow position: | chr1:56164606-56164966 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 6-382 |
| Cow position: | chr1:65387369-65387746 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 30 |
| Conread position: | 6-382 |
| Cow position: | chr1:69404055-69404434 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 48 |
| Conread position: | 6-382 |
| Cow position: | chr1:99914475-99914859 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 48 |
| Conread position: | 6-384 |
| Cow position: | chr1:72185832-72185448 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 27 |
| Conread position: | 6-389 |
| Cow position: | chr1:56143287-56142907 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 44 |
| Conread position: | 8-238 |
| Cow position: | chr1:67002140-67002368 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 9-166 |
| Cow position: | chr1:3384972-3384816 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 9-352 |
| Cow position: | chr1:101861012-101860679 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 186, 46 |
| Conread position: | 9-358 |
| Cow position: | chr1:84226859-84227200 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 251 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 179, 45 |
| Conread position: | 9-370 |
| Cow position: | chr1:79111541-79111898 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 146, 41 |
| Conread position: | 9-373 |
| Cow position: | chr1:70419328-70418966 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 168, 16 |
| Conread position: | 9-377 |
| Cow position: | chr1:16581449-16581099 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 86 |
| Conread position: | 9-377 |
| Cow position: | chr1:16587025-16586675 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 86 |
| Conread position: | 9-377 |
| Cow position: | chr1:99018957-99018583 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 9-380 |
| Cow position: | chr1:57697113-57696729 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 9-381 |
| Cow position: | chr1:62243591-62243223 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 79 |
| Conread position: | 9-382 |
| Cow position: | chr1:29039092-29039469 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 43 |
| Conread position: | 9-383 |
| Cow position: | chr1:44972371-44972740 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 9-384 |
| Cow position: | chr1:91892066-91891687 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 24 |
| Conread position: | 9-389 |
| Cow position: | chr1:79455902-79455516 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 45 |
| Conread position: | 9-390 |
| Cow position: | chr1:63502878-63503249 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 186, 45 |
| Conread position: | 9-436 |
| Cow position: | chr1:31812104-31812546 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 291 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 108, 16 |
| Conread position: | 10-195 |
| Cow position: | chr1:58200456-58200275 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 10-372 |
| Cow position: | chr1:15027410-15027770 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 185, 52 |
| Conread position: | 10-382 |
| Cow position: | chr1:89481904-89482254 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 189, 25 |
| Conread position: | 10-384 |
| Cow position: | chr1:86611195-86611563 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 189, 25 |
| Conread position: | 11-367 |
| Cow position: | chr1:23052818-23053166 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 188, 41 |
| Conread position: | 11-377 |
| Cow position: | chr1:38419725-38420092 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 107, 43 |
| Conread position: | 11-382 |
| Cow position: | chr1:55155947-55155576 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 26 |
| Conread position: | 11-382 |
| Cow position: | chr1:93855571-93855950 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 39 |
| Conread position: | 11-386 |
| Cow position: | chr1:21088484-21088866 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 23 |
| Conread position: | 12-381 |
| Cow position: | chr1:17940723-17940341 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 13-382 |
| Cow position: | chr1:31417443-31417078 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 39 |
| Conread position: | 16-238 |
| Cow position: | chr1:6195300-6195521 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 126 |
| Conread position: | 16-371 |
| Cow position: | chr1:29035344-29035699 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 81, 20 |
| Conread position: | 16-382 |
| Cow position: | chr1:62805114-62804739 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 150 |
| Conread position: | 17-377 |
| Cow position: | chr1:76750904-76750538 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 182, 55 |
| Conread position: | 17-382 |
| Cow position: | chr1:88131846-88132206 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 178, 37 |
| Conread position: | 18-380 |
| Cow position: | chr1:57569024-57569396 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 110 |
| Conread position: | 18-381 |
| Cow position: | chr1:77111004-77110644 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 152, 34 |
| Conread position: | 18-381 |
| Cow position: | chr1:80358112-80357745 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 131 |
| Conread position: | 18-382 |
| Cow position: | chr1:3934196-3933827 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 17 |
| Conread position: | 18-382 |
| Cow position: | chr1:79635917-79635558 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 107 |
| Conread position: | 20-377 |
| Cow position: | chr1:72081837-72082202 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 94 |
| Conread position: | 20-381 |
| Cow position: | chr1:40056167-40056533 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 178, 16 |
| Conread position: | 20-384 |
| Cow position: | chr1:17035525-17035160 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 93 |
| Conread position: | 21-378 |
| Cow position: | chr1:77160750-77160398 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 32, 94 |
| Conread position: | 23-381 |
| Cow position: | chr1:29363365-29363724 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 134 |
| Conread position: | 24-212 |
| Cow position: | chr1:26452163-26452350 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 172, 12 |
| Conread position: | 24-309 |
| Cow position: | chr1:77115649-77115368 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 25-373 |
| Cow position: | chr1:76703205-76702871 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 174, 53 |
| Conread position: | 25-377 |
| Cow position: | chr1:89495151-89494785 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 85 |
| Conread position: | 27-382 |
| Cow position: | chr1:41519685-41519340 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 51, 74 |
| Conread position: | 27-382 |
| Cow position: | chr1:58178037-58177697 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 27-382 |
| Cow position: | chr1:81841402-81841039 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 28-372 |
| Cow position: | chr1:69767647-69768001 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 138 |
| Conread position: | 30-381 |
| Cow position: | chr1:13581908-13581560 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 166, 48 |
| Conread position: | 37-382 |
| Cow position: | chr1:73069988-73069632 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 39-368 |
| Cow position: | chr1:89769633-89769293 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 137 |
| Conread position: | 40-382 |
| Cow position: | chr1:18139387-18139046 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 40-382 |
| Cow position: | chr1:33897340-33897690 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 23 |
| Conread position: | 46-357 |
| Cow position: | chr1:44100314-44100003 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 48-373 |
| Cow position: | chr1:22905863-22906188 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 149, 12 |
| Conread position: | 48-381 |
| Cow position: | chr1:56724245-56724580 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 85 |
| Conread position: | 49-381 |
| Cow position: | chr1:89429962-89430303 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 63 |
| Conread position: | 50-382 |
| Cow position: | chr1:58338051-58338397 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 33, 93 |
| Conread position: | 55-347 |
| Cow position: | chr1:7409288-7408997 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 61-358 |
| Cow position: | chr1:102813299-102813604 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 75 |
| Conread position: | 61-382 |
| Cow position: | chr1:24443257-24442931 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 138, 73 |
| Conread position: | 62-382 |
| Cow position: | chr1:57972604-57972288 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 66-382 |
| Cow position: | chr1:40749127-40748809 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 59, 95 |
| Conread position: | 68-381 |
| Cow position: | chr1:4209315-4209637 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 109 |
| Conread position: | 77-382 |
| Cow position: | chr1:30063482-30063786 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 9, 58 |
| Conread position: | 79-382 |
| Cow position: | chr1:32908943-32909243 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 79-382 |
| Cow position: | chr1:78923348-78923657 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 123, 70 |
| Conread position: | 81-295 |
| Cow position: | chr1:22455576-22455804 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 108 |
| Conread position: | 95-382 |
| Cow position: | chr1:82923018-82922724 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 30, 81 |
| Conread position: | 96-381 |
| Cow position: | chr1:81288270-81288564 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 98-381 |
| Cow position: | chr1:20830030-20830324 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 101-382 |
| Cow position: | chr1:11860102-11859820 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 17 |
| Conread position: | 104-371 |
| Cow position: | chr1:102014260-102014535 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 105-419 |
| Cow position: | chr1:93242661-93242981 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 134-379 |
| Cow position: | chr1:59934561-59934809 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 149-381 |
| Cow position: | chr1:82477164-82477405 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 157-382 |
| Cow position: | chr1:38417335-38417564 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 162-382 |
| Cow position: | chr1:3384742-3384521 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 171-337 |
| Cow position: | chr1:48247829-48248005 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 171-382 |
| Cow position: | chr1:18193105-18193327 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 181-381 |
| Cow position: | chr1:77922926-77923137 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 17, 199 |
| Conread position: | 181-382 |
| Cow position: | chr1:18240997-18240794 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 200-382 |
| Cow position: | chr1:76620221-76620039 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 224-382 |
| Cow position: | chr1:80445422-80445581 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 227-382 |
| Cow position: | chr1:26584374-26584530 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 238-381 |
| Cow position: | chr1:67002442-67002587 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 50, 133 |
| Conread position: | 243-370 |
| Cow position: | chr1:81862690-81862563 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 250-382 |
| Cow position: | chr1:30074171-30074301 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 104 |
| Conread position: | 251-382 |
| Cow position: | chr1:74285376-74285247 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 260-382 |
| Cow position: | chr1:29607969-29607848 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 91, 26 |
Show alignments to all cow chromosomes.