Cow genome map

Conread name: Ss1.1-Spl1-SPL01G040079.5

Conread position: 1-290
Cow position: chr10:38537433-38537139 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 158, 33

Conread position: 1-370
Cow position: chr10:16926596-16926976 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 33

Conread position: 1-370
Cow position: chr10:53321327-53320952 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 31

Conread position: 1-372
Cow position: chr10:20370010-20369647 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 261
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 198, 33

Conread position: 1-382
Cow position: chr10:1378574-1378948 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 53

Conread position: 1-382
Cow position: chr10:14334781-14334382 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 53

Conread position: 1-382
Cow position: chr10:19512658-19513029 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 48

Conread position: 1-382
Cow position: chr10:29011591-29011206 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 266
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 96

Conread position: 1-382
Cow position: chr10:32701792-32702179 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 53

Conread position: 1-382
Cow position: chr10:38344292-38343905 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 53

Conread position: 1-382
Cow position: chr10:40151178-40150811 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 117

Conread position: 1-382
Cow position: chr10:50135634-50136020 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 49

Conread position: 1-382
Cow position: chr10:57501887-57502259 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 262
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 197, 51

Conread position: 1-382
Cow position: chr10:57988929-57988542 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 1-382
Cow position: chr10:62407714-62407325 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 53

Conread position: 1-389
Cow position: chr10:20375768-20375379 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 53

Conread position: 2-360
Cow position: chr10:55285014-55285393 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 184

Conread position: 2-373
Cow position: chr10:21739681-21739304 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 34

Conread position: 2-381
Cow position: chr10:19840749-19841130 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 32

Conread position: 2-382
Cow position: chr10:33870351-33870737 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 237
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 109, 32

Conread position: 2-382
Cow position: chr10:41877986-41878375 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 164

Conread position: 3-265
Cow position: chr10:42752199-42752468 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 196
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 79, 51

Conread position: 3-351
Cow position: chr10:279538-279185 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 31

Conread position: 3-370
Cow position: chr10:41158517-41158877 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 255
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 195, 94

Conread position: 3-381
Cow position: chr10:1665465-1665080 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 31

Conread position: 3-381
Cow position: chr10:7897416-7897031 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-381
Cow position: chr10:19495211-19494838 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 271
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 195, 31

Conread position: 3-381
Cow position: chr10:21399602-21399232 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 84

Conread position: 3-381
Cow position: chr10:27664195-27663815 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 31

Conread position: 3-381
Cow position: chr10:28642603-28642991 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-381
Cow position: chr10:55094336-55094718 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 33

Conread position: 3-381
Cow position: chr10:57556270-57555884 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 31

Conread position: 3-382
Cow position: chr10:14804913-14805298 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 51

Conread position: 3-382
Cow position: chr10:39779051-39778669 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 143

Conread position: 3-382
Cow position: chr10:41568169-41568553 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-382
Cow position: chr10:44708546-44708159 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 88

Conread position: 4-380
Cow position: chr10:29110076-29109699 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 110

Conread position: 6-144
Cow position: chr10:21899130-21898996 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 6-239
Cow position: chr10:51844123-51843892 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 193, 46

Conread position: 6-363
Cow position: chr10:60360962-60361332 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 139

Conread position: 6-380
Cow position: chr10:30684423-30684042 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 48

Conread position: 6-382
Cow position: chr10:2119944-2119549 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 48

Conread position: 8-280
Cow position: chr10:42749888-42750167 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 54, 90

Conread position: 8-382
Cow position: chr10:16477833-16478206 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 258
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 77, 23

Conread position: 9-233
Cow position: chr10:57406837-57406612 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 152, 45

Conread position: 9-351
Cow position: chr10:10798021-10797670 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 229
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 96, 42

Conread position: 9-352
Cow position: chr10:58812677-58812336 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 227
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 96, 45

Conread position: 9-353
Cow position: chr10:187171-187504 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 225
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 189, 16

Conread position: 9-363
Cow position: chr10:8326244-8325918 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 255
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 17, 0

Conread position: 9-371
Cow position: chr10:24311290-24310928 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 245
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 189, 16

Conread position: 9-373
Cow position: chr10:58597445-58597809 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 248
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 101, 27

Conread position: 9-381
Cow position: chr10:24976694-24976333 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 264
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 184, 14

Conread position: 9-381
Cow position: chr10:28256341-28255965 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 27

Conread position: 9-381
Cow position: chr10:32429803-32430167 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 256
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 122, 16

Conread position: 9-382
Cow position: chr10:22576050-22575695 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 190, 27

Conread position: 9-382
Cow position: chr10:40641035-40641405 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 84, 46

Conread position: 9-382
Cow position: chr10:42111498-42111872 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 22

Conread position: 9-382
Cow position: chr10:51782336-51781960 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 45

Conread position: 9-383
Cow position: chr10:11821828-11822202 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 264
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 185, 85

Conread position: 10-381
Cow position: chr10:47908007-47908385 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 102

Conread position: 10-390
Cow position: chr10:17433428-17433818 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 57

Conread position: 11-382
Cow position: chr10:38544841-38544479 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 22

Conread position: 11-382
Cow position: chr10:64146005-64146379 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 43

Conread position: 12-390
Cow position: chr10:32558421-32558805 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 259
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 20, 130

Conread position: 15-382
Cow position: chr10:29845566-29845194 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 38

Conread position: 16-382
Cow position: chr10:22102326-22102690 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 265
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 33, 81

Conread position: 20-307
Cow position: chr10:33870168-33870462 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 176, 16

Conread position: 20-381
Cow position: chr10:11684551-11684181 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 158

Conread position: 20-382
Cow position: chr10:39040211-39039842 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 263
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 176, 35

Conread position: 23-381
Cow position: chr10:39180884-39181247 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 90

Conread position: 23-381
Cow position: chr10:39815313-39814947 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 90

Conread position: 24-376
Cow position: chr10:38849378-38849727 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 249
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 171, 26

Conread position: 25-291
Cow position: chr10:46192157-46192423 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 187
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 168, 30

Conread position: 28-384
Cow position: chr10:21883873-21884242 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 246
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 105, 145

Conread position: 29-248
Cow position: chr10:58928328-58928547 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 50

Conread position: 31-382
Cow position: chr10:48398004-48397648 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 249
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 69, 110

Conread position: 37-382
Cow position: chr10:21488064-21488410 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 129

Conread position: 38-382
Cow position: chr10:7280998-7280653 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 28

Conread position: 39-382
Cow position: chr10:126388-126741 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 136

Conread position: 39-382
Cow position: chr10:29631699-29631346 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 137

Conread position: 45-285
Cow position: chr10:50313021-50313264 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 90, 82

Conread position: 55-370
Cow position: chr10:10583233-10583563 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 147, 120

Conread position: 63-382
Cow position: chr10:39878304-39877966 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 130, 107

Conread position: 65-382
Cow position: chr10:20382882-20382573 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 21

Conread position: 67-386
Cow position: chr10:14852990-14853316 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 237
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 11

Conread position: 90-382
Cow position: chr10:54931043-54930754 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 18

Conread position: 96-382
Cow position: chr10:28946641-28946928 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 80

Conread position: 97-381
Cow position: chr10:14862842-14863110 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 186, 79

Conread position: 98-378
Cow position: chr10:40418330-40418617 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 97, 120

Conread position: 101-381
Cow position: chr10:51774043-51773762 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 96, 65

Conread position: 101-384
Cow position: chr10:53486056-53485773 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 199
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 7, 102

Conread position: 129-382
Cow position: chr10:29109776-29109530 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 161
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 113, 10

Conread position: 147-418
Cow position: chr10:31524977-31525257 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 23

Conread position: 154-382
Cow position: chr10:37771101-37771343 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 45, 21

Conread position: 175-349
Cow position: chr10:15368367-15368184 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 181-367
Cow position: chr10:47787930-47788120 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 21, 56

Conread position: 224-381
Cow position: chr10:25652136-25651978 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 17

Conread position: 224-382
Cow position: chr10:68160343-68160185 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 17

Conread position: 257-381
Cow position: chr10:10172059-10172186 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Show alignments to all cow chromosomes.