Cow genome map

Conread name: Ss1.1-Spl1-SPL01G040079.5

Conread position: 1-259
Cow position:
Alignm length: 264
Alignm identity: 183
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 198, 33

Conread position: 1-341
Cow position:
Alignm length: 355
Alignm identity: 241
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 22, 80

Conread position: 1-355
Cow position:
Alignm length: 368
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 53

Conread position: 1-369
Cow position:
Alignm length: 379
Alignm identity: 258
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 24, 166

Conread position: 1-369
Cow position:
Alignm length: 385
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 130

Conread position: 1-370
Cow position:
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 32

Conread position: 1-377
Cow position:
Alignm length: 384
Alignm identity: 263
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 21, 59

Conread position: 1-381
Cow position:
Alignm length: 396
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 53

Conread position: 1-382
Cow position:
Alignm length: 393
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 53

Conread position: 1-382
Cow position:
Alignm length: 396
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 53

Conread position: 1-382
Cow position:
Alignm length: 396
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 53

Conread position: 1-382
Cow position:
Alignm length: 393
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 36

Conread position: 1-382
Cow position:
Alignm length: 392
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 33

Conread position: 1-382
Cow position:
Alignm length: 394
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 53

Conread position: 1-382
Cow position:
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 53

Conread position: 1-382
Cow position:
Alignm length: 398
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 152

Conread position: 1-382
Cow position:
Alignm length: 408
Alignm identity: 284
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 41, 119

Conread position: 1-382
Cow position:
Alignm length: 391
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 174

Conread position: 1-382
Cow position:
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 167

Conread position: 1-384
Cow position:
Alignm length: 393
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 50

Conread position: 1-384
Cow position:
Alignm length: 392
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 53

Conread position: 1-385
Cow position:
Alignm length: 406
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 33

Conread position: 1-396
Cow position:
Alignm length: 406
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 53

Conread position: 2-381
Cow position:
Alignm length: 391
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 34

Conread position: 3-342
Cow position:
Alignm length: 351
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-369
Cow position:
Alignm length: 379
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 163

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 30

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 31

Conread position: 3-381
Cow position:
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 155

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 51

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 30

Conread position: 3-382
Cow position:
Alignm length: 394
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 33

Conread position: 3-382
Cow position:
Alignm length: 392
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 112

Conread position: 3-382
Cow position:
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 52

Conread position: 3-384
Cow position:
Alignm length: 394
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 31

Conread position: 3-433
Cow position:
Alignm length: 439
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 179

Conread position: 6-360
Cow position:
Alignm length: 358
Alignm identity: 241
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 189, 111

Conread position: 6-362
Cow position:
Alignm length: 362
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 20

Conread position: 6-382
Cow position:
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 91

Conread position: 6-382
Cow position:
Alignm length: 379
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 28

Conread position: 7-320
Cow position:
Alignm length: 326
Alignm identity: 228
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 107, 153

Conread position: 7-382
Cow position:
Alignm length: 394
Alignm identity: 268
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 98, 165

Conread position: 9-242
Cow position:
Alignm length: 237
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 181, 46

Conread position: 9-302
Cow position:
Alignm length: 307
Alignm identity: 212
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 21, 14

Conread position: 9-310
Cow position:
Alignm length: 306
Alignm identity: 206
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 188, 51

Conread position: 9-340
Cow position:
Alignm length: 334
Alignm identity: 208
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 185, 41

Conread position: 9-363
Cow position:
Alignm length: 363
Alignm identity: 249
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 40, 100

Conread position: 9-366
Cow position:
Alignm length: 366
Alignm identity: 229
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 190, 16

Conread position: 9-373
Cow position:
Alignm length: 376
Alignm identity: 251
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 177, 45

Conread position: 9-381
Cow position:
Alignm length: 378
Alignm identity: 259
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 100, 24

Conread position: 9-381
Cow position:
Alignm length: 379
Alignm identity: 272
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 101, 27

Conread position: 9-382
Cow position:
Alignm length: 376
Alignm identity: 259
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 31, 71

Conread position: 9-382
Cow position:
Alignm length: 379
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 9-382
Cow position:
Alignm length: 386
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 25

Conread position: 9-382
Cow position:
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 27

Conread position: 9-382
Cow position:
Alignm length: 387
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 75

Conread position: 9-382
Cow position:
Alignm length: 379
Alignm identity: 250
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 98, 28

Conread position: 9-382
Cow position:
Alignm length: 386
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 371

Conread position: 9-383
Cow position:
Alignm length: 379
Alignm identity: 244
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 184, 42

Conread position: 9-383
Cow position:
Alignm length: 390
Alignm identity: 263
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 13, 18

Conread position: 9-384
Cow position:
Alignm length: 388
Alignm identity: 262
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 106, 45

Conread position: 9-385
Cow position:
Alignm length: 383
Alignm identity: 251
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 190, 27

Conread position: 9-438
Cow position:
Alignm length: 447
Alignm identity: 303
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 76, 16

Conread position: 10-377
Cow position:
Alignm length: 370
Alignm identity: 239
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 165, 87

Conread position: 10-382
Cow position:
Alignm length: 386
Alignm identity: 255
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 24, 57

Conread position: 10-382
Cow position:
Alignm length: 385
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 23

Conread position: 11-334
Cow position:
Alignm length: 331
Alignm identity: 216
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 11

Conread position: 11-383
Cow position:
Alignm length: 386
Alignm identity: 249
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 175, 51

Conread position: 12-230
Cow position:
Alignm length: 223
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 123, 39

Conread position: 16-381
Cow position:
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 110

Conread position: 16-382
Cow position:
Alignm length: 384
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 62

Conread position: 18-381
Cow position:
Alignm length: 375
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 148

Conread position: 18-382
Cow position:
Alignm length: 368
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 151

Conread position: 18-382
Cow position:
Alignm length: 377
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 149

Conread position: 18-382
Cow position:
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 139

Conread position: 18-382
Cow position:
Alignm length: 379
Alignm identity: 267
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 55, 33

Conread position: 18-382
Cow position:
Alignm length: 376
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 16

Conread position: 20-370
Cow position:
Alignm length: 362
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 145

Conread position: 21-377
Cow position:
Alignm length: 375
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 32

Conread position: 23-382
Cow position:
Alignm length: 372
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 11

Conread position: 23-389
Cow position:
Alignm length: 390
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 125

Conread position: 23-389
Cow position:
Alignm length: 390
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 125

Conread position: 26-361
Cow position:
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 133

Conread position: 28-382
Cow position:
Alignm length: 361
Alignm identity: 234
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 114

Conread position: 37-377
Cow position:
Alignm length: 351
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 33

Conread position: 41-382
Cow position:
Alignm length: 346
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 136

Conread position: 41-382
Cow position:
Alignm length: 354
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 116

Conread position: 43-363
Cow position:
Alignm length: 330
Alignm identity: 218
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 115, 135

Conread position: 55-195
Cow position:
Alignm length: 141
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 70-351
Cow position:
Alignm length: 296
Alignm identity: 199
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 44

Conread position: 79-265
Cow position:
Alignm length: 191
Alignm identity: 148
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 120, 52

Conread position: 79-362
Cow position:
Alignm length: 290
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 162, 48

Conread position: 79-390
Cow position:
Alignm length: 321
Alignm identity: 215
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 5, 87

Conread position: 96-382
Cow position:
Alignm length: 293
Alignm identity: 203
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 33, 122

Conread position: 97-382
Cow position:
Alignm length: 295
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 54

Conread position: 97-382
Cow position:
Alignm length: 298
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 125, 69

Conread position: 98-381
Cow position:
Alignm length: 297
Alignm identity: 208
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 49

Conread position: 98-381
Cow position:
Alignm length: 293
Alignm identity: 211
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 101, 79

Conread position: 99-265
Cow position:
Alignm length: 171
Alignm identity: 127
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 23, 79

Conread position: 99-280
Cow position:
Alignm length: 190
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 67

Conread position: 100-378
Cow position:
Alignm length: 300
Alignm identity: 215
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 20, 67

Conread position: 103-374
Cow position:
Alignm length: 273
Alignm identity: 180
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 139, 83

Conread position: 106-285
Cow position:
Alignm length: 190
Alignm identity: 136
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 25, 62

Conread position: 113-357
Cow position:
Alignm length: 248
Alignm identity: 177
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 83, 62

Conread position: 119-383
Cow position:
Alignm length: 272
Alignm identity: 182
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 76, 49

Conread position: 149-382
Cow position:
Alignm length: 243
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 50, 28

Conread position: 158-381
Cow position:
Alignm length: 231
Alignm identity: 171
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 43, 0

Conread position: 171-384
Cow position:
Alignm length: 222
Alignm identity: 159
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 27, 66

Conread position: 177-382
Cow position:
Alignm length: 217
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 17, 202

Conread position: 178-382
Cow position:
Alignm length: 215
Alignm identity: 156
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 192

Conread position: 200-388
Cow position:
Alignm length: 191
Alignm identity: 139
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 63

Conread position: 224-382
Cow position:
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 19

Conread position: 227-365
Cow position:
Alignm length: 140
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 113, 14

Conread position: 227-383
Cow position:
Alignm length: 160
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 14

Conread position: 238-382
Cow position:
Alignm length: 148
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 243-389
Cow position:
Alignm length: 148
Alignm identity: 114
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 252-378
Cow position:
Alignm length: 130
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 25, 105

Conread position: 257-389
Cow position:
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 260-389
Cow position:
Alignm length: 133
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 108

Show alignments to all cow chromosomes.