Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-164 |
| Cow position: | chr12:22204750-22204589 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-258 |
| Cow position: | chr12:36449556-36449812 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 1-365 |
| Cow position: | chr12:35345550-35345910 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 1-381 |
| Cow position: | chr12:1403486-1403880 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr12:6405650-6405255 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 53 |
| Conread position: | 1-382 |
| Cow position: | chr12:14695008-14695387 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 106, 30 |
| Conread position: | 1-382 |
| Cow position: | chr12:25100081-25099696 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 53 |
| Conread position: | 1-382 |
| Cow position: | chr12:42858543-42858157 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 47 |
| Conread position: | 1-384 |
| Cow position: | chr12:8677110-8676711 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 160 |
| Conread position: | 2-289 |
| Cow position: | chr12:43030391-43030097 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 28, 158 |
| Conread position: | 2-382 |
| Cow position: | chr12:20997095-20996707 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 2-382 |
| Cow position: | chr12:23141202-23140807 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 164 |
| Conread position: | 3-339 |
| Cow position: | chr12:21428860-21429203 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-373 |
| Cow position: | chr12:32654535-32654920 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-382 |
| Cow position: | chr12:600367-599985 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 48 |
| Conread position: | 3-382 |
| Cow position: | chr12:21253619-21253232 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 3-382 |
| Cow position: | chr12:21387248-21386863 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-382 |
| Cow position: | chr12:37560002-37560391 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 33 |
| Conread position: | 6-382 |
| Cow position: | chr12:27854967-27854584 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 48 |
| Conread position: | 9-382 |
| Cow position: | chr12:27931908-27931524 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 168 |
| Conread position: | 9-383 |
| Cow position: | chr12:3208956-3209326 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 135, 16 |
| Conread position: | 10-377 |
| Cow position: | chr12:32677934-32677605 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 17-377 |
| Cow position: | chr12:17979733-17980085 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 121 |
| Conread position: | 20-382 |
| Cow position: | chr12:21942751-21943119 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 24-382 |
| Cow position: | chr12:11099237-11099611 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 30 |
| Conread position: | 27-382 |
| Cow position: | chr12:24977803-24977438 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 92, 125 |
| Conread position: | 28-382 |
| Cow position: | chr12:33119168-33119552 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 371 |
| Conread position: | 29-248 |
| Cow position: | chr12:1870323-1870542 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 29-382 |
| Cow position: | chr12:21209664-21210043 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 20, 86 |
| Conread position: | 30-382 |
| Cow position: | chr12:48471859-48471503 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 135 |
| Conread position: | 37-382 |
| Cow position: | chr12:8139087-8138761 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 156, 69 |
| Conread position: | 44-379 |
| Cow position: | chr12:1776933-1776594 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 99 |
| Conread position: | 49-381 |
| Cow position: | chr12:3361975-3362319 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 132 |
| Conread position: | 60-369 |
| Cow position: | chr12:35109740-35110044 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 110, 58 |
| Conread position: | 63-310 |
| Cow position: | chr12:35313340-35313089 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 131, 82 |
| Conread position: | 91-381 |
| Cow position: | chr12:31202409-31202110 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 107, 86 |
| Conread position: | 97-381 |
| Cow position: | chr12:22570737-22570450 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 98-382 |
| Cow position: | chr12:21199068-21199369 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 99-380 |
| Cow position: | chr12:1478148-1477863 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 96, 46 |
| Conread position: | 106-351 |
| Cow position: | chr12:21128225-21128466 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 110-383 |
| Cow position: | chr12:1888461-1888179 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 88, 67 |
| Conread position: | 112-411 |
| Cow position: | chr12:11580914-11581210 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 83, 65 |
| Conread position: | 118-365 |
| Cow position: | chr12:20843724-20843977 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 129-369 |
| Cow position: | chr12:42607148-42606899 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 69, 48 |
| Conread position: | 178-382 |
| Cow position: | chr12:14661184-14660971 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 180-384 |
| Cow position: | chr12:349570-349781 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 223-390 |
| Cow position: | chr12:19870123-19870284 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 237-381 |
| Cow position: | chr12:34174349-34174495 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 243-382 |
| Cow position: | chr12:24433846-24433705 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 128 |
Show alignments to all cow chromosomes.